Analysis of interatomic Contacts of Structural Units in PDB entry:
3J95

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J95 entry

There are 6 chains in PDB entry 3J95 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 215	GLY 737
B	LYS 217	GLY 737
C	LYS 217	GLY 737
D	LYS 217	GLY 737
E	LYS 217	GLY 737
F	GLY 219	GLY 737

There are134 helices in PDB entry 3J95. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	223	240	Right-handed alpha
Helix 2	2	A	242	249	Right-handed alpha
Helix 3	3	A	265	278	Right-handed alpha
Helix 4	4	A	296	316	Right-handed alpha
Helix 5	5	A	348	359	Right-handed alpha
Helix 6	6	A	380	385	Right-handed alpha
Helix 7	7	A	399	417	Right-handed alpha
Helix 8	8	A	425	433	Right-handed alpha
Helix 9	9	A	437	457	Right-handed alpha
Helix 10	10	A	480	489	Right-handed alpha
Helix 11	11	A	498	504	Right-handed alpha
Helix 12	12	A	511	531	Right-handed alpha
Helix 13	13	A	548	561	Right-handed alpha
Helix 14	14	A	569	574	Right-handed alpha
Helix 15	15	A	577	595	Right-handed alpha
Helix 16	16	A	604	610	Right-handed alpha
Helix 17	17	A	619	632	Right-handed alpha
Helix 18	18	A	648	655	Right-handed alpha
Helix 19	19	A	656	661	Right-handed alpha
Helix 20	20	A	672	684	Right-handed alpha
Helix 21	21	A	687	699	Right-handed alpha
Helix 22	22	A	706	719	Right-handed alpha
Helix 23	23	A	721	736	Right-handed alpha
Helix 24	24	B	224	240	Right-handed alpha
Helix 25	25	B	242	249	Right-handed alpha
Helix 26	26	B	265	278	Right-handed alpha
Helix 27	27	B	297	317	Right-handed alpha
Helix 28	28	B	348	359	Right-handed alpha
Helix 29	29	B	380	385	Right-handed alpha
Helix 30	30	B	399	417	Right-handed alpha
Helix 31	31	B	425	433	Right-handed alpha
Helix 32	32	B	437	457	Right-handed alpha
Helix 33	33	B	480	488	Right-handed alpha
Helix 34	34	B	498	502	Right-handed alpha
Helix 35	35	B	511	531	Right-handed alpha
Helix 36	36	B	548	561	Right-handed alpha
Helix 37	37	B	577	595	Right-handed alpha
Helix 38	38	B	604	609	Right-handed alpha
Helix 39	39	B	619	632	Right-handed alpha
Helix 40	40	B	648	656	Right-handed alpha
Helix 41	41	B	656	661	Right-handed alpha
Helix 42	42	B	672	684	Right-handed alpha
Helix 43	43	B	687	697	Right-handed alpha
Helix 44	44	B	707	719	Right-handed alpha
Helix 45	45	B	724	734	Right-handed alpha
Helix 46	46	C	224	240	Right-handed alpha
Helix 47	47	C	242	249	Right-handed alpha
Helix 48	48	C	265	278	Right-handed alpha
Helix 49	49	C	297	317	Right-handed alpha
Helix 50	50	C	329	334	Right-handed alpha
Helix 51	51	C	348	359	Right-handed alpha
Helix 52	52	C	380	385	Right-handed alpha
Helix 53	53	C	399	417	Right-handed alpha
Helix 54	54	C	425	433	Right-handed alpha
Helix 55	55	C	437	457	Right-handed alpha
Helix 56	56	C	480	489	Right-handed alpha
Helix 57	57	C	498	503	Right-handed alpha
Helix 58	58	C	511	531	Right-handed alpha
Helix 59	59	C	548	561	Right-handed alpha
Helix 60	60	C	577	595	Right-handed alpha
Helix 61	61	C	604	610	Right-handed alpha
Helix 62	62	C	619	632	Right-handed alpha
Helix 63	63	C	648	655	Right-handed alpha
Helix 64	64	C	656	661	Right-handed alpha
Helix 65	65	C	672	684	Right-handed alpha
Helix 66	66	C	687	699	Right-handed alpha
Helix 67	67	C	706	720	Right-handed alpha
Helix 68	68	C	725	737	Right-handed alpha
Helix 69	69	D	223	240	Right-handed alpha
Helix 70	70	D	242	249	Right-handed alpha
Helix 71	71	D	265	278	Right-handed alpha
Helix 72	72	D	295	317	Right-handed alpha
Helix 73	73	D	349	357	Right-handed alpha
Helix 74	74	D	380	385	Right-handed alpha
Helix 75	75	D	399	417	Right-handed alpha
Helix 76	76	D	425	433	Right-handed alpha
Helix 77	77	D	437	457	Right-handed alpha
Helix 78	78	D	481	488	Right-handed alpha
Helix 79	79	D	498	502	Right-handed 310
Helix 80	80	D	511	531	Right-handed alpha
Helix 81	81	D	548	559	Right-handed alpha
Helix 82	82	D	569	574	Right-handed alpha
Helix 83	83	D	577	595	Right-handed alpha
Helix 84	84	D	604	610	Right-handed alpha
Helix 85	85	D	619	632	Right-handed alpha
Helix 86	86	D	648	656	Right-handed alpha
Helix 87	87	D	657	661	Right-handed 310
Helix 88	88	D	673	684	Right-handed alpha
Helix 89	89	D	687	699	Right-handed alpha
Helix 90	90	D	706	718	Right-handed alpha
Helix 91	91	D	725	736	Right-handed alpha
Helix 92	92	E	224	240	Right-handed alpha
Helix 93	93	E	242	249	Right-handed alpha
Helix 94	94	E	265	278	Right-handed alpha
Helix 95	95	E	297	317	Right-handed alpha
Helix 96	96	E	348	359	Right-handed alpha
Helix 97	97	E	380	385	Right-handed alpha
Helix 98	98	E	399	417	Right-handed alpha
Helix 99	99	E	425	433	Right-handed alpha
Helix 100	100	E	437	457	Right-handed alpha
Helix 101	101	E	480	488	Right-handed alpha
Helix 102	102	E	511	530	Right-handed alpha
Helix 103	103	E	548	561	Right-handed alpha
Helix 104	104	E	569	574	Right-handed alpha
Helix 105	105	E	577	594	Right-handed alpha
Helix 106	106	E	604	610	Right-handed alpha
Helix 107	107	E	619	632	Right-handed alpha
Helix 108	108	E	648	655	Right-handed alpha
Helix 109	109	E	656	661	Right-handed alpha
Helix 110	110	E	672	684	Right-handed alpha
Helix 111	111	E	687	699	Right-handed alpha
Helix 112	112	E	706	719	Right-handed alpha
Helix 113	113	E	721	737	Right-handed alpha
Helix 114	114	F	224	240	Right-handed alpha
Helix 115	115	F	242	249	Right-handed alpha
Helix 116	116	F	265	278	Right-handed alpha
Helix 117	117	F	297	317	Right-handed alpha
Helix 118	118	F	348	359	Right-handed alpha
Helix 119	119	F	380	385	Right-handed alpha
Helix 120	120	F	399	417	Right-handed alpha
Helix 121	121	F	425	433	Right-handed alpha
Helix 122	122	F	437	456	Right-handed alpha
Helix 123	123	F	480	488	Right-handed alpha
Helix 124	124	F	511	531	Right-handed alpha
Helix 125	125	F	548	561	Right-handed alpha
Helix 126	126	F	577	595	Right-handed alpha
Helix 127	127	F	604	610	Right-handed alpha
Helix 128	128	F	619	632	Right-handed alpha
Helix 129	129	F	648	655	Right-handed alpha
Helix 130	130	F	656	661	Right-handed alpha
Helix 131	131	F	673	684	Right-handed alpha
Helix 132	132	F	687	699	Right-handed alpha
Helix 133	133	F	706	719	Right-handed alpha
Helix 134	134	F	723	736	Right-handed alpha

There are 14 sheets in PDB entry 3J95. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	285	first strand
Strand 2	A	323	328	parallel
Strand 3	A	367	372	parallel
Strand 4	A	255	259	parallel
Strand 5	A	391	394	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	567	first strand
Strand 2	A	597	602	parallel
Strand 3	A	639	646	parallel
Strand 4	A	536	542	parallel
Strand 5	A	663	666	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	286	first strand
Strand 2	B	323	328	parallel
Strand 3	B	367	373	parallel
Strand 4	B	255	259	parallel
Strand 5	B	391	394	parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	568	first strand
Strand 2	B	597	602	parallel
Strand 3	B	639	645	parallel
Strand 4	B	536	542	parallel
Strand 5	B	663	666	parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	286	first strand
Strand 2	C	323	328	parallel
Strand 3	C	367	373	parallel
Strand 4	C	255	259	parallel
Strand 5	C	391	394	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	568	first strand
Strand 2	C	597	602	parallel
Strand 3	C	639	646	parallel
Strand 4	C	536	542	parallel
Strand 5	C	663	666	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	286	first strand
Strand 2	D	323	328	parallel
Strand 3	D	367	373	parallel
Strand 4	D	255	259	parallel
Strand 5	D	391	394	parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	568	first strand
Strand 2	D	597	602	parallel
Strand 3	D	639	646	parallel
Strand 4	D	536	542	parallel
Strand 5	D	663	666	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	670	672	first strand
Strand 2	D	702	705	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	284	286	first strand
Strand 2	E	323	328	parallel
Strand 3	E	367	373	parallel
Strand 4	E	255	259	parallel
Strand 5	E	391	394	parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	564	566	first strand
Strand 2	E	597	603	parallel
Strand 3	E	639	646	parallel
Strand 4	E	536	542	parallel
Strand 5	E	663	666	parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	284	286	first strand
Strand 2	F	323	328	parallel
Strand 3	F	367	373	parallel
Strand 4	F	255	259	parallel
Strand 5	F	391	394	parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	564	568	first strand
Strand 2	F	597	602	parallel
Strand 3	F	639	646	parallel
Strand 4	F	536	542	parallel
Strand 5	F	665	666	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	670	672	first strand
Strand 2	F	702	705	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J95

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J95