Analysis of interatomic Contacts of Structural Units in PDB entry:
3J9B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J9B entry

There are 10 chains in PDB entry 3J9B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 UNK 204ALA 714
B
 MET 1UNK 621
C
 UNK 1UNK 512
H
 UNK 204ALA 714
I
 MET 1UNK 621
J
 UNK 1UNK 512
D
 A 10 A 14
E
 U 1 A 6
K
 A 10 A 14
L
 U 2 U 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 98 helices in PDB entry 3J9B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
209 216Right-handed alpha
Helix 2
2
A
225 238Right-handed alpha
Helix 3
3
A
239 253Right-handed alpha
Helix 4
4
A
303 312Right-handed alpha
Helix 5
5
A
331 352Right-handed alpha
Helix 6
6
A
363 371Right-handed alpha
Helix 7
7
A
404 416Right-handed alpha
Helix 8
8
A
436 452Right-handed alpha
Helix 9
9
A
453 476Right-handed alpha
Helix 10
10
A
533 538Right-handed 310
Helix 11
11
A
571 580Right-handed alpha
Helix 12
12
A
580 603Right-handed alpha
Helix 13
13
A
607 614Right-handed alpha
Helix 14
14
A
633 650Right-handed alpha
Helix 15
15
A
652 674Right-handed alpha
Helix 16
16
A
682 694Right-handed alpha
Helix 17
17
A
697 706Right-handed alpha
Helix 18
18
A
706 714Right-handed alpha
Helix 19
19
B
6 12Right-handed alpha
Helix 20
20
B
13 18Right-handed alpha
Helix 21
21
B
19 22Right-handed 310
Helix 22
22
B
37 50Right-handed alpha
Helix 23
23
B
83 96Right-handed alpha
Helix 24
24
B
100 114Right-handed alpha
Helix 25
25
B
117 123Right-handed alpha
Helix 26
26
B
133 149Right-handed alpha
Helix 27
27
B
166 174Right-handed alpha
Helix 28
28
B
209 216Right-handed alpha
Helix 29
29
B
216 223Right-handed alpha
Helix 30
30
B
247 267Right-handed alpha
Helix 31
31
B
278 291Right-handed alpha
Helix 32
32
B
307 312Right-handed alpha
Helix 33
33
B
314 326Right-handed alpha
Helix 34
34
B
333 347Right-handed alpha
Helix 35
35
B
369 377Right-handed alpha
Helix 36
36
B
383 394Right-handed alpha
Helix 37
37
B
406 427Right-handed alpha
Helix 38
38
B
458 474Right-handed alpha
Helix 39
39
B
502 514Right-handed alpha
Helix 40
40
B
541 557Right-handed alpha
Helix 41
41
B
561 578Right-handed alpha
Helix 42
42
B
603 609Right-handed alpha
Helix 43
43
B
614 621Right-handed alpha
Helix 44
44
C
2 12Right-handed alpha
Helix 45
45
C
102 112Right-handed alpha
Helix 46
46
C
202 208Right-handed alpha
Helix 47
47
C
302 312Right-handed alpha
Helix 48
48
C
402 410Right-handed alpha
Helix 49
49
C
502 512Right-handed alpha
Helix 50
50
H
209 216Right-handed alpha
Helix 51
51
H
225 238Right-handed alpha
Helix 52
52
H
239 253Right-handed alpha
Helix 53
53
H
303 312Right-handed alpha
Helix 54
54
H
331 352Right-handed alpha
Helix 55
55
H
363 371Right-handed alpha
Helix 56
56
H
404 416Right-handed alpha
Helix 57
57
H
436 452Right-handed alpha
Helix 58
58
H
453 476Right-handed alpha
Helix 59
59
H
533 538Right-handed 310
Helix 60
60
H
571 580Right-handed alpha
Helix 61
61
H
580 603Right-handed alpha
Helix 62
62
H
607 614Right-handed alpha
Helix 63
63
H
633 650Right-handed alpha
Helix 64
64
H
652 674Right-handed alpha
Helix 65
65
H
682 694Right-handed alpha
Helix 66
66
H
697 706Right-handed alpha
Helix 67
67
H
706 714Right-handed alpha
Helix 68
68
I
6 12Right-handed alpha
Helix 69
69
I
13 18Right-handed alpha
Helix 70
70
I
19 22Right-handed 310
Helix 71
71
I
37 50Right-handed alpha
Helix 72
72
I
83 96Right-handed alpha
Helix 73
73
I
100 114Right-handed alpha
Helix 74
74
I
117 123Right-handed alpha
Helix 75
75
I
133 149Right-handed alpha
Helix 76
76
I
166 174Right-handed alpha
Helix 77
77
I
209 216Right-handed alpha
Helix 78
78
I
216 223Right-handed alpha
Helix 79
79
I
247 267Right-handed alpha
Helix 80
80
I
278 291Right-handed alpha
Helix 81
81
I
307 312Right-handed alpha
Helix 82
82
I
314 326Right-handed alpha
Helix 83
83
I
333 347Right-handed alpha
Helix 84
84
I
369 377Right-handed alpha
Helix 85
85
I
383 394Right-handed alpha
Helix 86
86
I
406 427Right-handed alpha
Helix 87
87
I
458 474Right-handed alpha
Helix 88
88
I
502 514Right-handed alpha
Helix 89
89
I
541 557Right-handed alpha
Helix 90
90
I
561 578Right-handed alpha
Helix 91
91
I
603 609Right-handed alpha
Helix 92
92
I
614 621Right-handed alpha
Helix 93
93
J
2 12Right-handed alpha
Helix 94
94
J
102 112Right-handed alpha
Helix 95
95
J
202 208Right-handed alpha
Helix 96
96
J
302 312Right-handed alpha
Helix 97
97
J
402 410Right-handed alpha
Helix 98
98
J
502 512Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 3J9B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
496 506anti-parallel
Strand 3
A
518 526anti-parallel
Strand 4
A
557 570anti-parallel
Strand 5
A
541 550anti-parallel
Strand 6
A
317 324anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
496 506anti-parallel
Strand 3
A
481 490anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 624first strand
Strand 2
A
627 629anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
62 64anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 304first strand
Strand 2
B
483 486anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
440 442first strand
Strand 2
B
447 449anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
290 292first strand
Strand 2
H
496 506anti-parallel
Strand 3
H
518 526anti-parallel
Strand 4
H
557 570anti-parallel
Strand 5
H
541 550anti-parallel
Strand 6
H
317 324anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
290 292first strand
Strand 2
H
496 506anti-parallel
Strand 3
H
481 490anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
622 624first strand
Strand 2
H
627 629anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
56 58first strand
Strand 2
I
62 64anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
301 304first strand
Strand 2
I
483 486anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
440 442first strand
Strand 2
I
447 449anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il