Analysis of interatomic Contacts of Structural Units in PDB entry:
3J9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J9E entry

There is 1 chain in PDB entry 3J9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLY 2LEU 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3J9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
22 39Right-handed alpha
Helix 2
2
D
41 46Right-handed 310
Helix 3
3
D
47 66Right-handed alpha
Helix 4
4
D
89 115Right-handed alpha
Helix 5
5
D
115 123Right-handed alpha
Helix 6
6
D
124 134Right-handed alpha
Helix 7
7
D
146 179Right-handed alpha
Helix 8
8
D
184 210Right-handed alpha
Helix 9
9
D
224 231Right-handed alpha
Helix 10
10
D
251 256Right-handed alpha
Helix 11
11
D
257 266Right-handed alpha
Helix 12
12
D
279 289Right-handed alpha
Helix 13
13
D
295 324Right-handed alpha
Helix 14
14
D
324 340Right-handed alpha
Helix 15
15
D
347 354Right-handed alpha
Helix 16
16
D
357 361Right-handed 310
Helix 17
17
D
384 388Right-handed 310
Helix 18
18
D
424 439Right-handed alpha
Helix 19
19
D
449 453Right-handed 310
Helix 20
20
D
469 483Right-handed alpha
Helix 21
21
D
483 491Right-handed alpha
Helix 22
22
D
494 508Right-handed alpha
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There are 2 sheets in PDB entry 3J9E. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
217 219first strand
Strand 2
D
72 74parallel
Strand 3
D
510 512anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
401 406first strand
Strand 2
D
391 396anti-parallel
Strand 3
D
376 381anti-parallel
Strand 4
D
364 368anti-parallel
Strand 5
D
459 464anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il