Analysis of interatomic Contacts of Structural Units in PDB entry:
3J9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J9J entry

There are 4 chains in PDB entry 3J9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1LYS 315
B
 LEU 1LYS 315
C
 LEU 1LYS 315
D
 LEU 1LYS 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 3J9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 21Right-handed alpha
Helix 2
2
A
30 34Right-handed 310
Helix 3
3
A
35 49Right-handed alpha
Helix 4
4
A
49 74Right-handed alpha
Helix 5
5
A
88 119Right-handed alpha
Helix 6
6
A
120 125Right-handed alpha
Helix 7
7
A
130 152Right-handed alpha
Helix 8
8
A
156 172Right-handed alpha
Helix 9
9
A
173 179Right-handed 310
Helix 10
10
A
181 195Right-handed alpha
Helix 11
11
A
195 219Right-handed alpha
Helix 12
12
A
226 240Right-handed alpha
Helix 13
13
A
252 268Right-handed alpha
Helix 14
14
A
269 287Right-handed alpha
Helix 15
15
A
287 309Right-handed alpha
Helix 16
16
B
14 21Right-handed alpha
Helix 17
17
B
30 34Right-handed 310
Helix 18
18
B
35 49Right-handed alpha
Helix 19
19
B
49 74Right-handed alpha
Helix 20
20
B
88 119Right-handed alpha
Helix 21
21
B
120 125Right-handed alpha
Helix 22
22
B
130 152Right-handed alpha
Helix 23
23
B
156 172Right-handed alpha
Helix 24
24
B
173 179Right-handed 310
Helix 25
25
B
181 195Right-handed alpha
Helix 26
26
B
195 219Right-handed alpha
Helix 27
27
B
226 240Right-handed alpha
Helix 28
28
B
252 268Right-handed alpha
Helix 29
29
B
269 287Right-handed alpha
Helix 30
30
B
287 309Right-handed alpha
Helix 31
31
C
14 21Right-handed alpha
Helix 32
32
C
30 34Right-handed 310
Helix 33
33
C
35 49Right-handed alpha
Helix 34
34
C
49 74Right-handed alpha
Helix 35
35
C
88 119Right-handed alpha
Helix 36
36
C
120 125Right-handed alpha
Helix 37
37
C
130 152Right-handed alpha
Helix 38
38
C
156 172Right-handed alpha
Helix 39
39
C
173 179Right-handed 310
Helix 40
40
C
181 195Right-handed alpha
Helix 41
41
C
195 219Right-handed alpha
Helix 42
42
C
226 240Right-handed alpha
Helix 43
43
C
252 268Right-handed alpha
Helix 44
44
C
269 287Right-handed alpha
Helix 45
45
C
287 309Right-handed alpha
Helix 46
46
D
14 21Right-handed alpha
Helix 47
47
D
30 34Right-handed 310
Helix 48
48
D
35 49Right-handed alpha
Helix 49
49
D
49 74Right-handed alpha
Helix 50
50
D
88 119Right-handed alpha
Helix 51
51
D
120 125Right-handed alpha
Helix 52
52
D
130 152Right-handed alpha
Helix 53
53
D
156 172Right-handed alpha
Helix 54
54
D
173 179Right-handed 310
Helix 55
55
D
181 195Right-handed alpha
Helix 56
56
D
195 219Right-handed alpha
Helix 57
57
D
226 240Right-handed alpha
Helix 58
58
D
252 268Right-handed alpha
Helix 59
59
D
269 287Right-handed alpha
Helix 60
60
D
287 309Right-handed alpha
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There are no sheets in PDB entry 3J9J
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il