Analysis of interatomic Contacts of Structural Units in PDB entry:
3J9O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J9O entry

There are 12 chains in PDB entry 3J9O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LEU 135
B	VAL 79	ASN 505
C	ALA 2	LEU 135
D	VAL 79	ASN 505
E	ALA 2	LEU 135
F	VAL 79	ASN 505
G	ALA 2	LEU 135
H	VAL 79	ASN 505
I	ALA 2	LEU 135
J	VAL 79	ASN 505
K	ALA 2	LEU 135
L	VAL 79	ASN 505

There are151 helices in PDB entry 3J9O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	49	53	Right-handed 310
Helix 2	2	A	63	68	Right-handed alpha
Helix 3	3	A	96	101	Right-handed 310
Helix 4	4	A	103	109	Right-handed alpha
Helix 5	5	A	112	122	Right-handed alpha
Helix 6	6	B	80	92	Right-handed alpha
Helix 7	7	B	96	109	Right-handed alpha
Helix 8	8	B	110	113	Right-handed 310
Helix 9	9	B	126	137	Right-handed alpha
Helix 10	10	B	140	144	Right-handed 310
Helix 11	11	B	177	193	Right-handed alpha
Helix 12	12	B	209	214	Right-handed 310
Helix 13	13	B	218	223	Right-handed alpha
Helix 14	14	B	225	227	Right-handed 310
Helix 15	15	B	228	235	Right-handed alpha
Helix 16	16	B	236	237	Right-handed 310
Helix 17	17	B	238	242	Right-handed 310
Helix 18	18	B	288	302	Right-handed alpha
Helix 19	19	B	343	352	Right-handed alpha
Helix 20	20	B	383	394	Right-handed alpha
Helix 21	21	B	395	413	Right-handed alpha
Helix 22	22	B	422	435	Right-handed alpha
Helix 23	23	B	436	438	Right-handed 310
Helix 24	24	B	446	451	Right-handed alpha
Helix 25	25	B	497	502	Right-handed alpha
Helix 26	26	C	49	53	Right-handed 310
Helix 27	27	C	63	68	Right-handed alpha
Helix 28	28	C	96	101	Right-handed 310
Helix 29	29	C	103	109	Right-handed alpha
Helix 30	30	C	112	122	Right-handed alpha
Helix 31	31	D	80	88	Right-handed alpha
Helix 32	32	D	89	91	Right-handed 310
Helix 33	33	D	96	109	Right-handed alpha
Helix 34	34	D	110	113	Right-handed 310
Helix 35	35	D	126	137	Right-handed alpha
Helix 36	36	D	140	144	Right-handed 310
Helix 37	37	D	177	193	Right-handed alpha
Helix 38	38	D	209	214	Right-handed 310
Helix 39	39	D	218	223	Right-handed alpha
Helix 40	40	D	225	227	Right-handed 310
Helix 41	41	D	228	235	Right-handed alpha
Helix 42	42	D	236	237	Right-handed 310
Helix 43	43	D	238	242	Right-handed 310
Helix 44	44	D	288	302	Right-handed alpha
Helix 45	45	D	343	352	Right-handed alpha
Helix 46	46	D	383	394	Right-handed alpha
Helix 47	47	D	395	413	Right-handed alpha
Helix 48	48	D	422	435	Right-handed alpha
Helix 49	49	D	436	438	Right-handed 310
Helix 50	50	D	446	451	Right-handed alpha
Helix 51	51	D	497	502	Right-handed alpha
Helix 52	52	E	49	53	Right-handed 310
Helix 53	53	E	63	68	Right-handed alpha
Helix 54	54	E	96	101	Right-handed 310
Helix 55	55	E	103	109	Right-handed alpha
Helix 56	56	E	112	122	Right-handed alpha
Helix 57	57	F	80	92	Right-handed alpha
Helix 58	58	F	96	109	Right-handed alpha
Helix 59	59	F	110	113	Right-handed 310
Helix 60	60	F	126	137	Right-handed alpha
Helix 61	61	F	140	144	Right-handed 310
Helix 62	62	F	177	193	Right-handed alpha
Helix 63	63	F	209	214	Right-handed 310
Helix 64	64	F	218	223	Right-handed alpha
Helix 65	65	F	225	227	Right-handed 310
Helix 66	66	F	228	235	Right-handed alpha
Helix 67	67	F	236	237	Right-handed 310
Helix 68	68	F	238	242	Right-handed 310
Helix 69	69	F	288	302	Right-handed alpha
Helix 70	70	F	343	352	Right-handed alpha
Helix 71	71	F	383	394	Right-handed alpha
Helix 72	72	F	395	413	Right-handed alpha
Helix 73	73	F	422	435	Right-handed alpha
Helix 74	74	F	436	438	Right-handed 310
Helix 75	75	F	446	451	Right-handed alpha
Helix 76	76	F	497	502	Right-handed alpha
Helix 77	77	G	49	53	Right-handed 310
Helix 78	78	G	63	68	Right-handed alpha
Helix 79	79	G	96	101	Right-handed 310
Helix 80	80	G	103	109	Right-handed alpha
Helix 81	81	G	112	122	Right-handed alpha
Helix 82	82	H	80	92	Right-handed alpha
Helix 83	83	H	96	109	Right-handed alpha
Helix 84	84	H	110	113	Right-handed 310
Helix 85	85	H	126	137	Right-handed alpha
Helix 86	86	H	140	144	Right-handed 310
Helix 87	87	H	177	193	Right-handed alpha
Helix 88	88	H	209	214	Right-handed 310
Helix 89	89	H	218	223	Right-handed alpha
Helix 90	90	H	225	227	Right-handed 310
Helix 91	91	H	228	235	Right-handed alpha
Helix 92	92	H	236	237	Right-handed 310
Helix 93	93	H	238	242	Right-handed 310
Helix 94	94	H	288	302	Right-handed alpha
Helix 95	95	H	343	352	Right-handed alpha
Helix 96	96	H	383	394	Right-handed alpha
Helix 97	97	H	395	413	Right-handed alpha
Helix 98	98	H	422	435	Right-handed alpha
Helix 99	99	H	436	438	Right-handed 310
Helix 100	100	H	446	451	Right-handed alpha
Helix 101	101	H	497	502	Right-handed alpha
Helix 102	102	I	49	53	Right-handed 310
Helix 103	103	I	63	68	Right-handed alpha
Helix 104	104	I	96	101	Right-handed 310
Helix 105	105	I	103	109	Right-handed alpha
Helix 106	106	I	112	122	Right-handed alpha
Helix 107	107	J	80	92	Right-handed alpha
Helix 108	108	J	96	109	Right-handed alpha
Helix 109	109	J	110	113	Right-handed 310
Helix 110	110	J	126	137	Right-handed alpha
Helix 111	111	J	140	144	Right-handed 310
Helix 112	112	J	177	193	Right-handed alpha
Helix 113	113	J	209	214	Right-handed 310
Helix 114	114	J	218	223	Right-handed alpha
Helix 115	115	J	225	227	Right-handed 310
Helix 116	116	J	228	235	Right-handed alpha
Helix 117	117	J	236	237	Right-handed 310
Helix 118	118	J	238	242	Right-handed 310
Helix 119	119	J	288	302	Right-handed alpha
Helix 120	120	J	343	352	Right-handed alpha
Helix 121	121	J	383	394	Right-handed alpha
Helix 122	122	J	395	413	Right-handed alpha
Helix 123	123	J	422	435	Right-handed alpha
Helix 124	124	J	436	438	Right-handed 310
Helix 125	125	J	446	451	Right-handed alpha
Helix 126	126	J	497	502	Right-handed alpha
Helix 127	127	K	49	53	Right-handed 310
Helix 128	128	K	63	68	Right-handed alpha
Helix 129	129	K	96	101	Right-handed 310
Helix 130	130	K	103	109	Right-handed alpha
Helix 131	131	K	112	122	Right-handed alpha
Helix 132	132	L	80	92	Right-handed alpha
Helix 133	133	L	96	109	Right-handed alpha
Helix 134	134	L	110	113	Right-handed 310
Helix 135	135	L	126	137	Right-handed alpha
Helix 136	136	L	140	144	Right-handed 310
Helix 137	137	L	177	193	Right-handed alpha
Helix 138	138	L	209	214	Right-handed 310
Helix 139	139	L	218	223	Right-handed alpha
Helix 140	140	L	225	227	Right-handed 310
Helix 141	141	L	228	235	Right-handed alpha
Helix 142	142	L	236	237	Right-handed 310
Helix 143	143	L	238	242	Right-handed 310
Helix 144	144	L	288	302	Right-handed alpha
Helix 145	145	L	343	352	Right-handed alpha
Helix 146	146	L	383	394	Right-handed alpha
Helix 147	147	L	395	413	Right-handed alpha
Helix 148	148	L	422	435	Right-handed alpha
Helix 149	149	L	436	438	Right-handed 310
Helix 150	150	L	446	451	Right-handed alpha
Helix 151	151	L	497	502	Right-handed alpha

There are 42 sheets in PDB entry 3J9O. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	A	32	35	parallel
Strand 3	B	167	172	parallel
Strand 4	B	197	200	parallel
Strand 5	B	244	247	parallel
Strand 6	B	355	357	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	77	first strand
Strand 2	A	88	91	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	286	287	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	326	first strand
Strand 2	B	333	335	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	366	368	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	459	first strand
Strand 2	B	475	479	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	463	first strand
Strand 2	B	471	472	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	121	first strand
Strand 2	C	32	35	parallel
Strand 3	D	167	172	parallel
Strand 4	D	197	200	parallel
Strand 5	D	244	247	parallel
Strand 6	D	355	357	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	77	first strand
Strand 2	C	88	91	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	250	first strand
Strand 2	D	286	287	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	324	326	first strand
Strand 2	D	333	335	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	361	first strand
Strand 2	D	366	368	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	454	459	first strand
Strand 2	D	475	479	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	462	463	first strand
Strand 2	D	471	472	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	121	first strand
Strand 2	E	32	35	parallel
Strand 3	F	167	172	parallel
Strand 4	F	197	200	parallel
Strand 5	F	244	247	parallel
Strand 6	F	355	357	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	77	first strand
Strand 2	E	88	91	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	249	250	first strand
Strand 2	F	286	287	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	324	326	first strand
Strand 2	F	333	335	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	359	361	first strand
Strand 2	F	366	368	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	454	459	first strand
Strand 2	F	475	479	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	462	463	first strand
Strand 2	F	471	472	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	121	first strand
Strand 2	G	32	35	parallel
Strand 3	H	167	172	parallel
Strand 4	H	197	200	parallel
Strand 5	H	244	247	parallel
Strand 6	H	355	357	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	74	77	first strand
Strand 2	G	88	91	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	249	250	first strand
Strand 2	H	286	287	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	324	326	first strand
Strand 2	H	333	335	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	359	361	first strand
Strand 2	H	366	368	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	454	459	first strand
Strand 2	H	475	479	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	462	463	first strand
Strand 2	H	471	472	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	120	121	first strand
Strand 2	I	32	35	parallel
Strand 3	J	167	172	parallel
Strand 4	J	197	200	parallel
Strand 5	J	244	247	parallel
Strand 6	J	355	357	parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	74	77	first strand
Strand 2	I	88	91	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	249	250	first strand
Strand 2	J	286	287	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	324	326	first strand
Strand 2	J	333	335	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	359	361	first strand
Strand 2	J	366	368	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	454	459	first strand
Strand 2	J	475	479	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	462	463	first strand
Strand 2	J	471	472	anti-parallel

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There are 6 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	120	121	first strand
Strand 2	K	32	35	parallel
Strand 3	L	167	172	parallel
Strand 4	L	197	200	parallel
Strand 5	L	244	247	parallel
Strand 6	L	355	357	parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	74	77	first strand
Strand 2	K	88	91	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	249	250	first strand
Strand 2	L	286	287	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	324	326	first strand
Strand 2	L	333	335	anti-parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	359	361	first strand
Strand 2	L	366	368	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	454	459	first strand
Strand 2	L	475	479	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	462	463	first strand
Strand 2	L	471	472	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J9O

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J9O