Analysis of interatomic Contacts of Structural Units in PDB entry:
3J9Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J9Q entry

There are 48 chains in PDB entry 3J9Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ALA 386
S
 ILE 3LEU 168
B
 SER 2ALA 386
C
 SER 2ALA 386
D
 SER 2ALA 386
E
 SER 2ALA 386
F
 SER 2ALA 386
G
 SER 2ALA 386
K
 SER 2ALA 386
I
 SER 2ALA 386
O
 SER 2ALA 386
M
 SER 2ALA 386
Q
 SER 2ALA 386
H
 SER 2ALA 386
L
 SER 2ALA 386
J
 SER 2ALA 386
P
 SER 2ALA 386
N
 SER 2ALA 386
R
 SER 2ALA 386
X
 SER 2ALA 386
d
 SER 2ALA 386
a
 SER 2ALA 386
j
 SER 2ALA 386
g
 SER 2ALA 386
m
 SER 2ALA 386
U
 ILE 3LEU 168
T
 ILE 3LEU 168
W
 ILE 3LEU 168
V
 ILE 3LEU 168
Z
 ILE 3LEU 168
Y
 ILE 3LEU 168
e
 ILE 3LEU 168
b
 ILE 3LEU 168
k
 ILE 3LEU 168
h
 ILE 3LEU 168
n
 ILE 3LEU 168
c
 ILE 3LEU 168
i
 ILE 3LEU 168
f
 ILE 3LEU 168
o
 ILE 3LEU 168
l
 ILE 3LEU 168
p
 ILE 3LEU 168
q
 ILE 3LEU 168
s
 ILE 3LEU 168
r
 ILE 3LEU 168
u
 ILE 3LEU 168
t
 ILE 3LEU 168
v
 ILE 3LEU 168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are384 helices in PDB entry 3J9Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 59Right-handed alpha
Helix 2
2
A
63 74Right-handed alpha
Helix 3
3
A
90 100Right-handed alpha
Helix 4
4
A
109 115Right-handed 310
Helix 5
5
A
116 121Right-handed alpha
Helix 6
6
A
136 149Right-handed alpha
Helix 7
7
A
163 171Right-handed alpha
Helix 8
8
A
200 214Right-handed alpha
Helix 9
9
A
245 251Right-handed alpha
Helix 10
10
A
275 279Right-handed 310
Helix 11
11
A
280 296Right-handed alpha
Helix 12
12
A
298 302Right-handed 310
Helix 13
13
A
309 328Right-handed alpha
Helix 14
14
A
344 350Right-handed alpha
Helix 15
15
S
69 73Right-handed 310
Helix 16
16
S
159 167Right-handed alpha
Helix 17
17
B
51 59Right-handed alpha
Helix 18
18
B
63 74Right-handed alpha
Helix 19
19
B
90 100Right-handed alpha
Helix 20
20
B
109 115Right-handed 310
Helix 21
21
B
116 121Right-handed alpha
Helix 22
22
B
136 149Right-handed alpha
Helix 23
23
B
163 171Right-handed alpha
Helix 24
24
B
200 214Right-handed alpha
Helix 25
25
B
245 251Right-handed alpha
Helix 26
26
B
275 279Right-handed 310
Helix 27
27
B
280 296Right-handed alpha
Helix 28
28
B
298 302Right-handed 310
Helix 29
29
B
309 328Right-handed alpha
Helix 30
30
B
344 350Right-handed alpha
Helix 31
31
C
51 59Right-handed alpha
Helix 32
32
C
63 74Right-handed alpha
Helix 33
33
C
90 100Right-handed alpha
Helix 34
34
C
109 115Right-handed 310
Helix 35
35
C
116 121Right-handed alpha
Helix 36
36
C
136 149Right-handed alpha
Helix 37
37
C
163 171Right-handed alpha
Helix 38
38
C
200 214Right-handed alpha
Helix 39
39
C
245 251Right-handed alpha
Helix 40
40
C
275 279Right-handed 310
Helix 41
41
C
280 296Right-handed alpha
Helix 42
42
C
298 302Right-handed 310
Helix 43
43
C
309 328Right-handed alpha
Helix 44
44
C
344 350Right-handed alpha
Helix 45
45
D
51 59Right-handed alpha
Helix 46
46
D
63 74Right-handed alpha
Helix 47
47
D
90 100Right-handed alpha
Helix 48
48
D
109 115Right-handed 310
Helix 49
49
D
116 121Right-handed alpha
Helix 50
50
D
136 149Right-handed alpha
Helix 51
51
D
163 171Right-handed alpha
Helix 52
52
D
200 214Right-handed alpha
Helix 53
53
D
245 251Right-handed alpha
Helix 54
54
D
275 279Right-handed 310
Helix 55
55
D
280 296Right-handed alpha
Helix 56
56
D
298 302Right-handed 310
Helix 57
57
D
309 328Right-handed alpha
Helix 58
58
D
344 350Right-handed alpha
Helix 59
59
E
51 59Right-handed alpha
Helix 60
60
E
63 74Right-handed alpha
Helix 61
61
E
90 100Right-handed alpha
Helix 62
62
E
109 115Right-handed 310
Helix 63
63
E
116 121Right-handed alpha
Helix 64
64
E
136 149Right-handed alpha
Helix 65
65
E
163 171Right-handed alpha
Helix 66
66
E
200 214Right-handed alpha
Helix 67
67
E
245 251Right-handed alpha
Helix 68
68
E
275 279Right-handed 310
Helix 69
69
E
280 296Right-handed alpha
Helix 70
70
E
298 302Right-handed 310
Helix 71
71
E
309 328Right-handed alpha
Helix 72
72
E
344 350Right-handed alpha
Helix 73
73
F
51 59Right-handed alpha
Helix 74
74
F
63 74Right-handed alpha
Helix 75
75
F
90 100Right-handed alpha
Helix 76
76
F
109 115Right-handed 310
Helix 77
77
F
116 121Right-handed alpha
Helix 78
78
F
136 149Right-handed alpha
Helix 79
79
F
163 171Right-handed alpha
Helix 80
80
F
200 214Right-handed alpha
Helix 81
81
F
245 251Right-handed alpha
Helix 82
82
F
275 279Right-handed 310
Helix 83
83
F
280 296Right-handed alpha
Helix 84
84
F
298 302Right-handed 310
Helix 85
85
F
309 328Right-handed alpha
Helix 86
86
F
344 350Right-handed alpha
Helix 87
87
G
51 59Right-handed alpha
Helix 88
88
G
63 74Right-handed alpha
Helix 89
89
G
90 100Right-handed alpha
Helix 90
90
G
109 115Right-handed 310
Helix 91
91
G
116 121Right-handed alpha
Helix 92
92
G
136 149Right-handed alpha
Helix 93
93
G
163 171Right-handed alpha
Helix 94
94
G
200 214Right-handed alpha
Helix 95
95
G
245 251Right-handed alpha
Helix 96
96
G
275 279Right-handed 310
Helix 97
97
G
280 296Right-handed alpha
Helix 98
98
G
298 302Right-handed 310
Helix 99
99
G
309 328Right-handed alpha
Helix 100
100
G
344 350Right-handed alpha
Helix 101
101
K
51 59Right-handed alpha
Helix 102
102
K
63 74Right-handed alpha
Helix 103
103
K
90 100Right-handed alpha
Helix 104
104
K
109 115Right-handed 310
Helix 105
105
K
116 121Right-handed alpha
Helix 106
106
K
136 149Right-handed alpha
Helix 107
107
K
163 171Right-handed alpha
Helix 108
108
K
200 214Right-handed alpha
Helix 109
109
K
245 251Right-handed alpha
Helix 110
110
K
275 279Right-handed 310
Helix 111
111
K
280 296Right-handed alpha
Helix 112
112
K
298 302Right-handed 310
Helix 113
113
K
309 328Right-handed alpha
Helix 114
114
K
344 350Right-handed alpha
Helix 115
115
I
51 59Right-handed alpha
Helix 116
116
I
63 74Right-handed alpha
Helix 117
117
I
90 100Right-handed alpha
Helix 118
118
I
109 115Right-handed 310
Helix 119
119
I
116 121Right-handed alpha
Helix 120
120
I
136 149Right-handed alpha
Helix 121
121
I
163 171Right-handed alpha
Helix 122
122
I
200 214Right-handed alpha
Helix 123
123
I
245 251Right-handed alpha
Helix 124
124
I
275 279Right-handed 310
Helix 125
125
I
280 296Right-handed alpha
Helix 126
126
I
298 302Right-handed 310
Helix 127
127
I
309 328Right-handed alpha
Helix 128
128
I
344 350Right-handed alpha
Helix 129
129
O
51 59Right-handed alpha
Helix 130
130
O
63 74Right-handed alpha
Helix 131
131
O
90 100Right-handed alpha
Helix 132
132
O
109 115Right-handed 310
Helix 133
133
O
116 121Right-handed alpha
Helix 134
134
O
136 149Right-handed alpha
Helix 135
135
O
163 171Right-handed alpha
Helix 136
136
O
200 214Right-handed alpha
Helix 137
137
O
245 251Right-handed alpha
Helix 138
138
O
275 279Right-handed 310
Helix 139
139
O
280 296Right-handed alpha
Helix 140
140
O
298 302Right-handed 310
Helix 141
141
O
309 328Right-handed alpha
Helix 142
142
O
344 350Right-handed alpha
Helix 143
143
M
51 59Right-handed alpha
Helix 144
144
M
63 74Right-handed alpha
Helix 145
145
M
90 100Right-handed alpha
Helix 146
146
M
109 115Right-handed 310
Helix 147
147
M
116 121Right-handed alpha
Helix 148
148
M
136 149Right-handed alpha
Helix 149
149
M
163 171Right-handed alpha
Helix 150
150
M
200 214Right-handed alpha
Helix 151
151
M
245 251Right-handed alpha
Helix 152
152
M
275 279Right-handed 310
Helix 153
153
M
280 296Right-handed alpha
Helix 154
154
M
298 302Right-handed 310
Helix 155
155
M
309 328Right-handed alpha
Helix 156
156
M
344 350Right-handed alpha
Helix 157
157
Q
51 59Right-handed alpha
Helix 158
158
Q
63 74Right-handed alpha
Helix 159
159
Q
90 100Right-handed alpha
Helix 160
160
Q
109 115Right-handed 310
Helix 161
161
Q
116 121Right-handed alpha
Helix 162
162
Q
136 149Right-handed alpha
Helix 163
163
Q
163 171Right-handed alpha
Helix 164
164
Q
200 214Right-handed alpha
Helix 165
165
Q
245 251Right-handed alpha
Helix 166
166
Q
275 279Right-handed 310
Helix 167
167
Q
280 296Right-handed alpha
Helix 168
168
Q
298 302Right-handed 310
Helix 169
169
Q
309 328Right-handed alpha
Helix 170
170
Q
344 350Right-handed alpha
Helix 171
171
H
51 59Right-handed alpha
Helix 172
172
H
63 74Right-handed alpha
Helix 173
173
H
90 100Right-handed alpha
Helix 174
174
H
109 115Right-handed 310
Helix 175
175
H
116 121Right-handed alpha
Helix 176
176
H
136 149Right-handed alpha
Helix 177
177
H
163 171Right-handed alpha
Helix 178
178
H
200 214Right-handed alpha
Helix 179
179
H
245 251Right-handed alpha
Helix 180
180
H
275 279Right-handed 310
Helix 181
181
H
280 296Right-handed alpha
Helix 182
182
H
298 302Right-handed 310
Helix 183
183
H
309 328Right-handed alpha
Helix 184
184
H
344 350Right-handed alpha
Helix 185
185
L
51 59Right-handed alpha
Helix 186
186
L
63 74Right-handed alpha
Helix 187
187
L
90 100Right-handed alpha
Helix 188
188
L
109 115Right-handed 310
Helix 189
189
L
116 121Right-handed alpha
Helix 190
190
L
136 149Right-handed alpha
Helix 191
191
L
163 171Right-handed alpha
Helix 192
192
L
200 214Right-handed alpha
Helix 193
193
L
245 251Right-handed alpha
Helix 194
194
L
275 279Right-handed 310
Helix 195
195
L
280 296Right-handed alpha
Helix 196
196
L
298 302Right-handed 310
Helix 197
197
L
309 328Right-handed alpha
Helix 198
198
L
344 350Right-handed alpha
Helix 199
199
J
51 59Right-handed alpha
Helix 200
200
J
63 74Right-handed alpha
Helix 201
201
J
90 100Right-handed alpha
Helix 202
202
J
109 115Right-handed 310
Helix 203
203
J
116 121Right-handed alpha
Helix 204
204
J
136 149Right-handed alpha
Helix 205
205
J
163 171Right-handed alpha
Helix 206
206
J
200 214Right-handed alpha
Helix 207
207
J
245 251Right-handed alpha
Helix 208
208
J
275 279Right-handed 310
Helix 209
209
J
280 296Right-handed alpha
Helix 210
210
J
298 302Right-handed 310
Helix 211
211
J
309 328Right-handed alpha
Helix 212
212
J
344 350Right-handed alpha
Helix 213
213
P
51 59Right-handed alpha
Helix 214
214
P
63 74Right-handed alpha
Helix 215
215
P
90 100Right-handed alpha
Helix 216
216
P
109 115Right-handed 310
Helix 217
217
P
116 121Right-handed alpha
Helix 218
218
P
136 149Right-handed alpha
Helix 219
219
P
163 171Right-handed alpha
Helix 220
220
P
200 214Right-handed alpha
Helix 221
221
P
245 251Right-handed alpha
Helix 222
222
P
275 279Right-handed 310
Helix 223
223
P
280 296Right-handed alpha
Helix 224
224
P
298 302Right-handed 310
Helix 225
225
P
309 328Right-handed alpha
Helix 226
226
P
344 350Right-handed alpha
Helix 227
227
N
51 59Right-handed alpha
Helix 228
228
N
63 74Right-handed alpha
Helix 229
229
N
90 100Right-handed alpha
Helix 230
230
N
109 115Right-handed 310
Helix 231
231
N
116 121Right-handed alpha
Helix 232
232
N
136 149Right-handed alpha
Helix 233
233
N
163 171Right-handed alpha
Helix 234
234
N
200 214Right-handed alpha
Helix 235
235
N
245 251Right-handed alpha
Helix 236
236
N
275 279Right-handed 310
Helix 237
237
N
280 296Right-handed alpha
Helix 238
238
N
298 302Right-handed 310
Helix 239
239
N
309 328Right-handed alpha
Helix 240
240
N
344 350Right-handed alpha
Helix 241
241
R
51 59Right-handed alpha
Helix 242
242
R
63 74Right-handed alpha
Helix 243
243
R
90 100Right-handed alpha
Helix 244
244
R
109 115Right-handed 310
Helix 245
245
R
116 121Right-handed alpha
Helix 246
246
R
136 149Right-handed alpha
Helix 247
247
R
163 171Right-handed alpha
Helix 248
248
R
200 214Right-handed alpha
Helix 249
249
R
245 251Right-handed alpha
Helix 250
250
R
275 279Right-handed 310
Helix 251
251
R
280 296Right-handed alpha
Helix 252
252
R
298 302Right-handed 310
Helix 253
253
R
309 328Right-handed alpha
Helix 254
254
R
344 350Right-handed alpha
Helix 255
255
X
51 59Right-handed alpha
Helix 256
256
X
63 74Right-handed alpha
Helix 257
257
X
90 100Right-handed alpha
Helix 258
258
X
109 115Right-handed 310
Helix 259
259
X
116 121Right-handed alpha
Helix 260
260
X
136 149Right-handed alpha
Helix 261
261
X
163 171Right-handed alpha
Helix 262
262
X
200 214Right-handed alpha
Helix 263
263
X
245 251Right-handed alpha
Helix 264
264
X
275 279Right-handed 310
Helix 265
265
X
280 296Right-handed alpha
Helix 266
266
X
298 302Right-handed 310
Helix 267
267
X
309 328Right-handed alpha
Helix 268
268
X
344 350Right-handed alpha
Helix 269
269
d
51 59Right-handed alpha
Helix 270
270
d
63 74Right-handed alpha
Helix 271
271
d
90 100Right-handed alpha
Helix 272
272
d
109 115Right-handed 310
Helix 273
273
d
116 121Right-handed alpha
Helix 274
274
d
136 149Right-handed alpha
Helix 275
275
d
163 171Right-handed alpha
Helix 276
276
d
200 214Right-handed alpha
Helix 277
277
d
245 251Right-handed alpha
Helix 278
278
d
275 279Right-handed 310
Helix 279
279
d
280 296Right-handed alpha
Helix 280
280
d
298 302Right-handed 310
Helix 281
281
d
309 328Right-handed alpha
Helix 282
282
d
344 350Right-handed alpha
Helix 283
283
a
51 59Right-handed alpha
Helix 284
284
a
63 74Right-handed alpha
Helix 285
285
a
90 100Right-handed alpha
Helix 286
286
a
109 115Right-handed 310
Helix 287
287
a
116 121Right-handed alpha
Helix 288
288
a
136 149Right-handed alpha
Helix 289
289
a
163 171Right-handed alpha
Helix 290
290
a
200 214Right-handed alpha
Helix 291
291
a
245 251Right-handed alpha
Helix 292
292
a
275 279Right-handed 310
Helix 293
293
a
280 296Right-handed alpha
Helix 294
294
a
298 302Right-handed 310
Helix 295
295
a
309 328Right-handed alpha
Helix 296
296
a
344 350Right-handed alpha
Helix 297
297
j
51 59Right-handed alpha
Helix 298
298
j
63 74Right-handed alpha
Helix 299
299
j
90 100Right-handed alpha
Helix 300
300
j
109 115Right-handed 310
Helix 301
301
j
116 121Right-handed alpha
Helix 302
302
j
136 149Right-handed alpha
Helix 303
303
j
163 171Right-handed alpha
Helix 304
304
j
200 214Right-handed alpha
Helix 305
305
j
245 251Right-handed alpha
Helix 306
306
j
275 279Right-handed 310
Helix 307
307
j
280 296Right-handed alpha
Helix 308
308
j
298 302Right-handed 310
Helix 309
309
j
309 328Right-handed alpha
Helix 310
310
j
344 350Right-handed alpha
Helix 311
311
g
51 59Right-handed alpha
Helix 312
312
g
63 74Right-handed alpha
Helix 313
313
g
90 100Right-handed alpha
Helix 314
314
g
109 115Right-handed 310
Helix 315
315
g
116 121Right-handed alpha
Helix 316
316
g
136 149Right-handed alpha
Helix 317
317
g
163 171Right-handed alpha
Helix 318
318
g
200 214Right-handed alpha
Helix 319
319
g
245 251Right-handed alpha
Helix 320
320
g
275 279Right-handed 310
Helix 321
321
g
280 296Right-handed alpha
Helix 322
322
g
298 302Right-handed 310
Helix 323
323
g
309 328Right-handed alpha
Helix 324
324
g
344 350Right-handed alpha
Helix 325
325
m
51 59Right-handed alpha
Helix 326
326
m
63 74Right-handed alpha
Helix 327
327
m
90 100Right-handed alpha
Helix 328
328
m
109 115Right-handed 310
Helix 329
329
m
116 121Right-handed alpha
Helix 330
330
m
136 149Right-handed alpha
Helix 331
331
m
163 171Right-handed alpha
Helix 332
332
m
200 214Right-handed alpha
Helix 333
333
m
245 251Right-handed alpha
Helix 334
334
m
275 279Right-handed 310
Helix 335
335
m
280 296Right-handed alpha
Helix 336
336
m
298 302Right-handed 310
Helix 337
337
m
309 328Right-handed alpha
Helix 338
338
m
344 350Right-handed alpha
Helix 339
339
U
69 73Right-handed 310
Helix 340
340
U
159 167Right-handed alpha
Helix 341
341
T
69 73Right-handed 310
Helix 342
342
T
159 167Right-handed alpha
Helix 343
343
W
69 73Right-handed 310
Helix 344
344
W
159 167Right-handed alpha
Helix 345
345
V
69 73Right-handed 310
Helix 346
346
V
159 167Right-handed alpha
Helix 347
347
Z
69 73Right-handed 310
Helix 348
348
Z
159 167Right-handed alpha
Helix 349
349
Y
69 73Right-handed 310
Helix 350
350
Y
159 167Right-handed alpha
Helix 351
351
e
69 73Right-handed 310
Helix 352
352
e
159 167Right-handed alpha
Helix 353
353
b
69 73Right-handed 310
Helix 354
354
b
159 167Right-handed alpha
Helix 355
355
k
69 73Right-handed 310
Helix 356
356
k
159 167Right-handed alpha
Helix 357
357
h
69 73Right-handed 310
Helix 358
358
h
159 167Right-handed alpha
Helix 359
359
n
69 73Right-handed 310
Helix 360
360
n
159 167Right-handed alpha
Helix 361
361
c
69 73Right-handed 310
Helix 362
362
c
159 167Right-handed alpha
Helix 363
363
i
69 73Right-handed 310
Helix 364
364
i
159 167Right-handed alpha
Helix 365
365
f
69 73Right-handed 310
Helix 366
366
f
159 167Right-handed alpha
Helix 367
367
o
69 73Right-handed 310
Helix 368
368
o
159 167Right-handed alpha
Helix 369
369
l
69 73Right-handed 310
Helix 370
370
l
159 167Right-handed alpha
Helix 371
371
p
69 73Right-handed 310
Helix 372
372
p
159 167Right-handed alpha
Helix 373
373
q
69 73Right-handed 310
Helix 374
374
q
159 167Right-handed alpha
Helix 375
375
s
69 73Right-handed 310
Helix 376
376
s
159 167Right-handed alpha
Helix 377
377
r
69 73Right-handed 310
Helix 378
378
r
159 167Right-handed alpha
Helix 379
379
u
69 73Right-handed 310
Helix 380
380
u
159 167Right-handed alpha
Helix 381
381
t
69 73Right-handed 310
Helix 382
382
t
159 167Right-handed alpha
Helix 383
383
v
69 73Right-handed 310
Helix 384
384
v
159 167Right-handed alpha
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