Analysis of interatomic Contacts of Structural Units in PDB entry:
3J9S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J9S entry

There is 1 chain in PDB entry 3J9S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3J9S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 18Right-handed alpha
Helix 2
2
A
23 42Right-handed alpha
Helix 3
3
A
74 101Right-handed alpha
Helix 4
4
A
113 120Right-handed alpha
Helix 5
5
A
122 128Right-handed 310
Helix 6
6
A
133 144Right-handed alpha
Helix 7
7
A
201 203Right-handed 310
Helix 8
8
A
301 308Right-handed alpha
Helix 9
9
A
341 353Right-handed alpha
Helix 10
10
A
362 365Right-handed 310
Helix 11
11
A
366 373Right-handed alpha
Helix 12
12
A
375 396Right-handed alpha
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There are 4 sheets in PDB entry 3J9S. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
57 60anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
317 331anti-parallel
Strand 3
A
251 253parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 168first strand
Strand 2
A
177 185anti-parallel
Strand 3
A
187 194anti-parallel
Strand 4
A
317 331anti-parallel
Strand 5
A
205 227anti-parallel
Strand 6
A
278 295anti-parallel
Strand 7
A
257 264anti-parallel
Strand 8
A
269 274anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
246 249anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il