Analysis of interatomic Contacts of Structural Units in PDB entry:
3JA6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JA6 entry

There are 18 chains in PDB entry 3JA6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 9	VAL 147
B	LYS 9	VAL 147
C	SER 293	VAL 671
D	LYS 9	VAL 147
E	SER 293	VAL 671
F	LYS 9	VAL 147
G	GLY 221	LYS 529
H	SER 222	TYR 528
I	GLY 221	LYS 529
J	SER 222	TYR 528
K	GLY 221	LYS 529
L	SER 222	TYR 528
M	GLY 221	LYS 529
N	SER 222	TYR 528
O	GLY 221	LYS 529
P	SER 222	TYR 528
Q	GLY 221	LYS 529
R	SER 222	TYR 528

There are 74 helices in PDB entry 3JA6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	65	70	Right-handed alpha
Helix 2	2	A	116	120	Right-handed 310
Helix 3	3	A	137	147	Right-handed alpha
Helix 4	4	B	65	70	Right-handed alpha
Helix 5	5	B	115	121	Right-handed alpha
Helix 6	6	B	137	146	Right-handed alpha
Helix 7	7	C	300	328	Right-handed alpha
Helix 8	8	C	329	355	Right-handed alpha
Helix 9	9	C	358	363	Right-handed alpha
Helix 10	10	C	364	376	Right-handed alpha
Helix 11	11	C	392	414	Right-handed alpha
Helix 12	12	C	417	424	Right-handed alpha
Helix 13	13	C	455	466	Right-handed alpha
Helix 14	14	C	470	477	Right-handed alpha
Helix 15	15	C	478	483	Right-handed alpha
Helix 16	16	C	484	488	Right-handed 310
Helix 17	17	C	506	517	Right-handed alpha
Helix 18	18	C	595	599	Right-handed alpha
Helix 19	19	D	65	70	Right-handed alpha
Helix 20	20	D	105	107	Right-handed 310
Helix 21	21	D	137	146	Right-handed alpha
Helix 22	22	E	300	328	Right-handed alpha
Helix 23	23	E	329	354	Right-handed alpha
Helix 24	24	E	358	362	Right-handed alpha
Helix 25	25	E	364	377	Right-handed alpha
Helix 26	26	E	393	414	Right-handed alpha
Helix 27	27	E	417	424	Right-handed alpha
Helix 28	28	E	455	467	Right-handed alpha
Helix 29	29	E	470	477	Right-handed alpha
Helix 30	30	E	478	483	Right-handed alpha
Helix 31	31	E	484	488	Right-handed 310
Helix 32	32	E	507	517	Right-handed alpha
Helix 33	33	E	595	599	Right-handed alpha
Helix 34	34	E	641	645	Right-handed 310
Helix 35	35	E	666	671	Right-handed alpha
Helix 36	36	F	65	70	Right-handed alpha
Helix 37	37	F	105	107	Right-handed 310
Helix 38	38	F	137	146	Right-handed alpha
Helix 39	39	G	223	374	Right-handed alpha
Helix 40	40	G	374	529	Right-handed alpha
Helix 41	41	H	224	234	Right-handed alpha
Helix 42	42	H	234	314	Right-handed alpha
Helix 43	43	H	314	372	Right-handed alpha
Helix 44	44	H	374	443	Right-handed alpha
Helix 45	45	H	443	528	Right-handed alpha
Helix 46	46	I	222	372	Right-handed alpha
Helix 47	47	I	375	400	Right-handed alpha
Helix 48	48	I	401	529	Right-handed alpha
Helix 49	49	J	224	372	Right-handed alpha
Helix 50	50	J	374	523	Right-handed alpha
Helix 51	51	J	523	528	Right-handed alpha
Helix 52	52	K	223	374	Right-handed alpha
Helix 53	53	K	374	415	Right-handed alpha
Helix 54	54	K	416	529	Right-handed alpha
Helix 55	55	L	224	372	Right-handed alpha
Helix 56	56	L	374	377	Right-handed 310
Helix 57	57	L	378	528	Right-handed alpha
Helix 58	58	M	223	374	Right-handed alpha
Helix 59	59	M	378	529	Right-handed alpha
Helix 60	60	N	224	232	Right-handed alpha
Helix 61	61	N	232	314	Right-handed alpha
Helix 62	62	N	314	372	Right-handed alpha
Helix 63	63	N	374	528	Right-handed alpha
Helix 64	64	O	222	372	Right-handed alpha
Helix 65	65	O	377	529	Right-handed alpha
Helix 66	66	P	223	372	Right-handed alpha
Helix 67	67	P	374	528	Right-handed alpha
Helix 68	68	Q	223	374	Right-handed alpha
Helix 69	69	Q	375	377	Right-handed 310
Helix 70	70	Q	378	415	Right-handed alpha
Helix 71	71	Q	416	529	Right-handed alpha
Helix 72	72	R	223	234	Right-handed alpha
Helix 73	73	R	234	372	Right-handed alpha
Helix 74	74	R	374	528	Right-handed alpha

There are 21 sheets in PDB entry 3JA6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	105	first strand
Strand 2	A	10	18	anti-parallel
Strand 3	A	21	25	anti-parallel
Strand 4	A	134	136	parallel
Strand 5	A	122	126	anti-parallel
Strand 6	A	109	110	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	35	first strand
Strand 2	A	80	85	anti-parallel
Strand 3	A	90	95	anti-parallel
Strand 4	A	58	63	parallel
Strand 5	A	49	55	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	105	first strand
Strand 2	B	10	18	anti-parallel
Strand 3	B	21	25	anti-parallel
Strand 4	B	131	136	parallel
Strand 5	B	122	128	anti-parallel
Strand 6	B	109	110	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	35	first strand
Strand 2	B	80	84	anti-parallel
Strand 3	B	92	95	anti-parallel
Strand 4	B	58	63	parallel
Strand 5	B	49	55	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	299	first strand
Strand 2	E	295	299	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	357	first strand
Strand 2	C	390	391	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	385	first strand
Strand 2	C	430	438	parallel
Strand 3	C	442	449	anti-parallel
Strand 4	C	531	538	anti-parallel
Strand 5	C	520	525	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	628	629	first strand
Strand 2	C	544	551	anti-parallel
Strand 3	C	633	635	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	628	629	first strand
Strand 2	C	544	551	anti-parallel
Strand 3	C	554	559	anti-parallel
Strand 4	C	663	665	parallel
Strand 5	C	650	652	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	563	569	first strand
Strand 2	C	610	617	anti-parallel
Strand 3	C	620	626	anti-parallel
Strand 4	C	592	594	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	583	585	first strand
Strand 2	C	588	590	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	104	first strand
Strand 2	D	11	18	anti-parallel
Strand 3	D	21	26	anti-parallel
Strand 4	D	133	136	parallel
Strand 5	D	122	126	anti-parallel
Strand 6	D	109	110	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	35	first strand
Strand 2	D	80	84	anti-parallel
Strand 3	D	92	95	anti-parallel
Strand 4	D	58	63	parallel
Strand 5	D	49	55	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	355	357	first strand
Strand 2	E	390	392	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	380	385	first strand
Strand 2	E	430	439	parallel
Strand 3	E	442	449	anti-parallel
Strand 4	E	530	538	anti-parallel
Strand 5	E	520	526	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	628	629	first strand
Strand 2	E	543	551	anti-parallel
Strand 3	E	633	636	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	628	629	first strand
Strand 2	E	543	551	anti-parallel
Strand 3	E	554	559	anti-parallel
Strand 4	E	663	664	parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	563	570	first strand
Strand 2	E	609	617	anti-parallel
Strand 3	E	620	626	anti-parallel
Strand 4	E	592	594	parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	575	576	first strand
Strand 2	E	581	585	anti-parallel
Strand 3	E	588	590	anti-parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	104	first strand
Strand 2	F	11	18	anti-parallel
Strand 3	F	21	26	anti-parallel
Strand 4	F	133	136	parallel
Strand 5	F	122	126	anti-parallel
Strand 6	F	109	110	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	35	first strand
Strand 2	F	80	84	anti-parallel
Strand 3	F	92	95	anti-parallel
Strand 4	F	58	63	parallel
Strand 5	F	49	55	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JA6

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JA6