Analysis of interatomic Contacts of Structural Units in PDB entry:
3JA8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JA8 entry

There are 6 chains in PDB entry 3JA8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	PRO 201	TYR 864
3	THR 13	LEU 738
4	LEU 177	THR 838
5	SER 2	SER 693
6	VAL 103	VAL 840
7	MET 1	GLN 729

There are132 helices in PDB entry 3JA8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	2	203	217	Right-handed alpha
Helix 2	2	2	225	237	Right-handed alpha
Helix 3	3	2	245	253	Right-handed alpha
Helix 4	4	2	253	262	Right-handed alpha
Helix 5	5	2	263	283	Right-handed alpha
Helix 6	6	2	285	289	Right-handed 310
Helix 7	7	2	310	314	Right-handed 310
Helix 8	8	2	413	415	Right-handed 310
Helix 9	9	2	477	486	Right-handed alpha
Helix 10	10	2	492	502	Right-handed alpha
Helix 11	11	2	508	521	Right-handed alpha
Helix 12	12	2	548	560	Right-handed alpha
Helix 13	13	2	594	599	Right-handed alpha
Helix 14	14	2	609	612	Right-handed 310
Helix 15	15	2	613	627	Right-handed alpha
Helix 16	16	2	662	667	Right-handed alpha
Helix 17	17	2	670	676	Right-handed alpha
Helix 18	18	2	688	705	Right-handed alpha
Helix 19	19	2	759	774	Right-handed alpha
Helix 20	20	2	784	799	Right-handed alpha
Helix 21	21	2	806	824	Right-handed alpha
Helix 22	22	2	830	849	Right-handed alpha
Helix 23	23	2	852	858	Right-handed alpha
Helix 24	24	3	18	27	Right-handed alpha
Helix 25	25	3	29	34	Right-handed alpha
Helix 26	26	3	36	60	Right-handed alpha
Helix 27	27	3	99	107	Right-handed alpha
Helix 28	28	3	107	117	Right-handed alpha
Helix 29	29	3	117	137	Right-handed alpha
Helix 30	30	3	281	283	Right-handed 310
Helix 31	31	3	344	354	Right-handed alpha
Helix 32	32	3	358	367	Right-handed alpha
Helix 33	33	3	374	387	Right-handed alpha
Helix 34	34	3	414	426	Right-handed alpha
Helix 35	35	3	460	465	Right-handed alpha
Helix 36	36	3	479	491	Right-handed alpha
Helix 37	37	3	537	543	Right-handed alpha
Helix 38	38	3	554	569	Right-handed alpha
Helix 39	39	3	652	666	Right-handed alpha
Helix 40	40	3	675	694	Right-handed alpha
Helix 41	41	3	698	717	Right-handed alpha
Helix 42	42	3	722	738	Right-handed alpha
Helix 43	43	4	189	200	Right-handed alpha
Helix 44	44	4	204	209	Right-handed alpha
Helix 45	45	4	224	237	Right-handed alpha
Helix 46	46	4	254	264	Right-handed alpha
Helix 47	47	4	264	285	Right-handed alpha
Helix 48	48	4	294	299	Right-handed alpha
Helix 49	49	4	420	424	Right-handed 310
Helix 50	50	4	478	483	Right-handed alpha
Helix 51	51	4	483	488	Right-handed alpha
Helix 52	52	4	502	513	Right-handed alpha
Helix 53	53	4	514	516	Right-handed 310
Helix 54	54	4	517	527	Right-handed alpha
Helix 55	55	4	533	546	Right-handed alpha
Helix 56	56	4	573	585	Right-handed alpha
Helix 57	57	4	619	624	Right-handed alpha
Helix 58	58	4	633	637	Right-handed 310
Helix 59	59	4	644	652	Right-handed alpha
Helix 60	60	4	687	692	Right-handed alpha
Helix 61	61	4	695	702	Right-handed alpha
Helix 62	62	4	716	725	Right-handed alpha
Helix 63	63	4	745	758	Right-handed alpha
Helix 64	64	4	766	779	Right-handed alpha
Helix 65	65	4	795	811	Right-handed alpha
Helix 66	66	4	812	814	Right-handed 310
Helix 67	67	4	821	835	Right-handed alpha
Helix 68	68	5	27	37	Right-handed alpha
Helix 69	69	5	44	56	Right-handed alpha
Helix 70	70	5	64	72	Right-handed alpha
Helix 71	71	5	72	82	Right-handed alpha
Helix 72	72	5	82	108	Right-handed alpha
Helix 73	73	5	152	156	Right-handed 310
Helix 74	74	5	279	283	Right-handed 310
Helix 75	75	5	350	361	Right-handed alpha
Helix 76	76	5	365	371	Right-handed alpha
Helix 77	77	5	381	393	Right-handed alpha
Helix 78	78	5	421	433	Right-handed alpha
Helix 79	79	5	467	472	Right-handed alpha
Helix 80	80	5	487	500	Right-handed alpha
Helix 81	81	5	529	534	Right-handed alpha
Helix 82	82	5	544	550	Right-handed alpha
Helix 83	83	5	561	577	Right-handed alpha
Helix 84	84	5	579	592	Right-handed alpha
Helix 85	85	5	596	610	Right-handed alpha
Helix 86	86	5	615	637	Right-handed alpha
Helix 87	87	5	638	640	Right-handed 310
Helix 88	88	5	649	667	Right-handed alpha
Helix 89	89	5	673	693	Right-handed alpha
Helix 90	90	6	104	121	Right-handed alpha
Helix 91	91	6	135	147	Right-handed alpha
Helix 92	92	6	155	162	Right-handed alpha
Helix 93	93	6	164	193	Right-handed alpha
Helix 94	94	6	275	279	Right-handed 310
Helix 95	95	6	511	522	Right-handed alpha
Helix 96	96	6	524	533	Right-handed alpha
Helix 97	97	6	541	552	Right-handed alpha
Helix 98	98	6	580	592	Right-handed alpha
Helix 99	99	6	641	644	Right-handed 310
Helix 100	100	6	646	658	Right-handed alpha
Helix 101	101	6	694	699	Right-handed alpha
Helix 102	102	6	702	707	Right-handed alpha
Helix 103	103	6	720	736	Right-handed alpha
Helix 104	104	6	749	759	Right-handed alpha
Helix 105	105	6	769	783	Right-handed alpha
Helix 106	106	6	796	815	Right-handed alpha
Helix 107	107	6	820	837	Right-handed alpha
Helix 108	108	7	13	25	Right-handed alpha
Helix 109	109	7	61	72	Right-handed alpha
Helix 110	110	7	82	93	Right-handed alpha
Helix 111	111	7	102	108	Right-handed alpha
Helix 112	112	7	111	124	Right-handed alpha
Helix 113	113	7	139	165	Right-handed alpha
Helix 114	114	7	178	189	Right-handed alpha
Helix 115	115	7	193	197	Right-handed 310
Helix 116	116	7	210	214	Right-handed 310
Helix 117	117	7	336	340	Right-handed 310
Helix 118	118	7	363	367	Right-handed 310
Helix 119	119	7	397	407	Right-handed alpha
Helix 120	120	7	409	418	Right-handed alpha
Helix 121	121	7	425	438	Right-handed alpha
Helix 122	122	7	467	477	Right-handed alpha
Helix 123	123	7	489	494	Right-handed alpha
Helix 124	124	7	531	540	Right-handed alpha
Helix 125	125	7	541	543	Right-handed 310
Helix 126	126	7	587	592	Right-handed alpha
Helix 127	127	7	605	622	Right-handed alpha
Helix 128	128	7	634	646	Right-handed alpha
Helix 129	129	7	653	674	Right-handed alpha
Helix 130	130	7	685	704	Right-handed alpha
Helix 131	131	7	709	724	Right-handed alpha
Helix 132	132	7	725	729	Right-handed 310

There are 36 sheets in PDB entry 3JA8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	241	242	first strand
Strand 2	2	294	295	parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	351	352	first strand
Strand 2	2	331	337	anti-parallel
Strand 3	2	381	391	anti-parallel
Strand 4	2	406	411	anti-parallel
Strand 5	2	450	457	parallel
Strand 6	2	423	431	anti-parallel
Strand 7	2	317	327	anti-parallel
Strand 8	2	381	391	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	563	565	first strand
Strand 2	2	603	607	parallel
Strand 3	2	645	650	parallel
Strand 4	2	539	542	parallel
Strand 5	2	679	682	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	629	631	first strand
Strand 2	2	638	640	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	180	185	first strand
Strand 2	3	291	299	anti-parallel
Strand 3	3	320	322	anti-parallel
Strand 4	3	274	279	parallel
Strand 5	3	250	258	anti-parallel
Strand 6	3	193	196	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	180	185	first strand
Strand 2	3	291	299	anti-parallel
Strand 3	3	327	329	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	198	199	first strand
Strand 2	3	212	213	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	201	202	first strand
Strand 2	3	242	243	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	391	392	first strand
Strand 2	3	398	399	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	431	433	first strand
Strand 2	3	469	473	parallel
Strand 3	3	511	515	parallel
Strand 4	3	405	409	parallel
Strand 5	3	545	549	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	494	497	first strand
Strand 2	3	504	507	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	325	327	first strand
Strand 2	4	436	442	anti-parallel
Strand 3	4	458	461	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	339	344	first strand
Strand 2	4	390	394	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	348	349	first strand
Strand 2	4	382	383	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	397	400	first strand
Strand 2	4	414	417	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	590	591	first strand
Strand 2	4	628	631	parallel
Strand 3	4	670	675	parallel
Strand 4	4	564	568	parallel
Strand 5	4	704	708	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	606	607	first strand
Strand 2	4	614	615	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	653	656	first strand
Strand 2	4	663	666	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	60	63	first strand
Strand 2	5	136	139	parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	159	168	first strand
Strand 2	5	257	259	anti-parallel
Strand 3	5	273	277	anti-parallel
Strand 4	5	326	335	parallel
Strand 5	5	291	300	anti-parallel
Strand 6	5	159	168	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	189	193	first strand
Strand 2	5	173	182	anti-parallel
Strand 3	5	242	243	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	189	193	first strand
Strand 2	5	173	182	anti-parallel
Strand 3	5	249	253	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	436	440	first strand
Strand 2	5	476	480	parallel
Strand 3	5	518	522	parallel
Strand 4	5	412	413	parallel
Strand 5	5	552	553	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	453	456	first strand
Strand 2	5	460	464	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	501	503	first strand
Strand 2	5	512	514	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	151	154	first strand
Strand 2	6	265	268	parallel

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There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	455	456	first strand
Strand 2	6	377	381	parallel
Strand 3	6	357	362	anti-parallel
Strand 4	6	289	297	anti-parallel
Strand 5	6	394	398	anti-parallel
Strand 6	6	458	460	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	319	320	first strand
Strand 2	6	306	309	anti-parallel
Strand 3	6	346	352	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	404	405	first strand
Strand 2	6	450	451	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	570	574	first strand
Strand 2	6	677	682	parallel
Strand 3	6	635	639	parallel
Strand 4	6	597	598	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	660	664	first strand
Strand 2	6	669	673	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	77	81	first strand
Strand 2	7	201	205	parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	269	272	first strand
Strand 2	7	252	261	anti-parallel
Strand 3	7	306	316	anti-parallel
Strand 4	7	330	335	anti-parallel
Strand 5	7	376	377	parallel

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There are 6 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	299	300	first strand
Strand 2	7	252	261	anti-parallel
Strand 3	7	306	316	anti-parallel
Strand 4	7	238	246	anti-parallel
Strand 5	7	347	354	anti-parallel
Strand 6	7	380	383	anti-parallel

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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	481	484	first strand
Strand 2	7	520	524	parallel
Strand 3	7	562	566	parallel
Strand 4	7	455	459	parallel
Strand 5	7	596	599	parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	496	498	first strand
Strand 2	7	507	509	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JA8

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JA8