Analysis of interatomic Contacts of Structural Units in PDB entry:
3JAC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JAC entry

There are 3 chains in PDB entry 3JAC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 UNK 201ARG 2544
B
 UNK 201ARG 2544
C
 UNK 201ARG 2544
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are130 helices in PDB entry 3JAC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
201 240Right-handed alpha
Helix 2
2
A
244 296Right-handed alpha
Helix 3
3
A
448 471Right-handed alpha
Helix 4
4
A
563 576Right-handed alpha
Helix 5
5
A
878 896Right-handed alpha
Helix 6
6
A
998 1019Right-handed alpha
Helix 7
7
A
1121 1136Right-handed alpha
Helix 8
8
A
1137 1145Right-handed alpha
Helix 9
9
A
1249 1263Right-handed alpha
Helix 10
10
A
1365 1386Right-handed alpha
Helix 11
11
A
1488 1505Right-handed alpha
Helix 12
12
A
1509 1514Right-handed alpha
Helix 13
13
A
1740 1759Right-handed alpha
Helix 14
14
A
1759 1780Right-handed alpha
Helix 15
15
A
1782 1804Right-handed alpha
Helix 16
16
A
1962 1969Right-handed alpha
Helix 17
17
A
1969 1974Right-handed alpha
Helix 18
18
A
1975 1989Right-handed alpha
Helix 19
19
A
1991 2021Right-handed alpha
Helix 20
20
A
2025 2047Right-handed alpha
Helix 21
21
A
2055 2078Right-handed alpha
Helix 22
22
A
2082 2105Right-handed alpha
Helix 23
23
A
2106 2111Right-handed alpha
Helix 24
24
A
2111 2123Right-handed alpha
Helix 25
25
A
2123 2149Right-handed alpha
Helix 26
26
A
2149 2175Right-handed alpha
Helix 27
27
A
2175 2180Right-handed alpha
Helix 28
28
A
2186 2212Right-handed alpha
Helix 29
29
A
2252 2264Right-handed alpha
Helix 30
30
A
2266 2274Right-handed alpha
Helix 31
31
A
2275 2276Right-handed 310
Helix 32
32
A
2277 2279Right-handed 310
Helix 33
33
A
2297 2311Right-handed alpha
Helix 34
34
A
2326 2330Right-handed 310
Helix 35
35
A
2348 2358Right-handed alpha
Helix 36
36
A
2393 2398Right-handed 310
Helix 37
37
A
2461 2484Right-handed alpha
Helix 38
38
A
2486 2497Right-handed alpha
Helix 39
39
A
2500 2511Right-handed alpha
Helix 40
40
A
2511 2520Right-handed alpha
Helix 41
41
A
2521 2525Right-handed 310
Helix 42
42
A
2527 2544Right-handed alpha
Helix 43
43
B
202 242Right-handed alpha
Helix 44
44
B
243 249Right-handed alpha
Helix 45
45
B
250 296Right-handed alpha
Helix 46
46
B
448 471Right-handed alpha
Helix 47
47
B
563 576Right-handed alpha
Helix 48
48
B
878 896Right-handed alpha
Helix 49
49
B
998 1019Right-handed alpha
Helix 50
50
B
1121 1130Right-handed alpha
Helix 51
51
B
1130 1147Right-handed alpha
Helix 52
52
B
1249 1263Right-handed alpha
Helix 53
53
B
1365 1386Right-handed alpha
Helix 54
54
B
1488 1505Right-handed alpha
Helix 55
55
B
1508 1512Right-handed 310
Helix 56
56
B
1740 1759Right-handed alpha
Helix 57
57
B
1759 1780Right-handed alpha
Helix 58
58
B
1785 1804Right-handed alpha
Helix 59
59
B
1962 1969Right-handed alpha
Helix 60
60
B
1969 1974Right-handed alpha
Helix 61
61
B
1975 1989Right-handed alpha
Helix 62
62
B
1994 2021Right-handed alpha
Helix 63
63
B
2025 2050Right-handed alpha
Helix 64
64
B
2057 2078Right-handed alpha
Helix 65
65
B
2082 2105Right-handed alpha
Helix 66
66
B
2106 2111Right-handed alpha
Helix 67
67
B
2111 2123Right-handed alpha
Helix 68
68
B
2123 2149Right-handed alpha
Helix 69
69
B
2149 2175Right-handed alpha
Helix 70
70
B
2175 2180Right-handed alpha
Helix 71
71
B
2186 2205Right-handed alpha
Helix 72
72
B
2207 2212Right-handed 310
Helix 73
73
B
2252 2264Right-handed alpha
Helix 74
74
B
2266 2274Right-handed alpha
Helix 75
75
B
2275 2276Right-handed 310
Helix 76
76
B
2277 2279Right-handed 310
Helix 77
77
B
2297 2311Right-handed alpha
Helix 78
78
B
2326 2330Right-handed 310
Helix 79
79
B
2348 2358Right-handed alpha
Helix 80
80
B
2393 2398Right-handed 310
Helix 81
81
B
2461 2484Right-handed alpha
Helix 82
82
B
2486 2497Right-handed alpha
Helix 83
83
B
2500 2511Right-handed alpha
Helix 84
84
B
2511 2520Right-handed alpha
Helix 85
85
B
2521 2525Right-handed 310
Helix 86
86
B
2527 2544Right-handed alpha
Helix 87
87
C
202 244Right-handed alpha
Helix 88
88
C
245 247Right-handed 310
Helix 89
89
C
248 253Right-handed alpha
Helix 90
90
C
253 296Right-handed alpha
Helix 91
91
C
448 471Right-handed alpha
Helix 92
92
C
563 576Right-handed alpha
Helix 93
93
C
878 896Right-handed alpha
Helix 94
94
C
998 1019Right-handed alpha
Helix 95
95
C
1121 1141Right-handed alpha
Helix 96
96
C
1141 1147Right-handed alpha
Helix 97
97
C
1249 1263Right-handed alpha
Helix 98
98
C
1365 1386Right-handed alpha
Helix 99
99
C
1488 1505Right-handed alpha
Helix 100
100
C
1508 1512Right-handed 310
Helix 101
101
C
1740 1759Right-handed alpha
Helix 102
102
C
1759 1780Right-handed alpha
Helix 103
103
C
1782 1804Right-handed alpha
Helix 104
104
C
1962 1969Right-handed alpha
Helix 105
105
C
1969 1974Right-handed alpha
Helix 106
106
C
1975 1991Right-handed alpha
Helix 107
107
C
1995 2021Right-handed alpha
Helix 108
108
C
2025 2048Right-handed alpha
Helix 109
109
C
2058 2078Right-handed alpha
Helix 110
110
C
2082 2105Right-handed alpha
Helix 111
111
C
2106 2111Right-handed alpha
Helix 112
112
C
2111 2123Right-handed alpha
Helix 113
113
C
2123 2149Right-handed alpha
Helix 114
114
C
2149 2175Right-handed alpha
Helix 115
115
C
2175 2180Right-handed alpha
Helix 116
116
C
2186 2212Right-handed alpha
Helix 117
117
C
2252 2264Right-handed alpha
Helix 118
118
C
2266 2274Right-handed alpha
Helix 119
119
C
2275 2276Right-handed 310
Helix 120
120
C
2277 2279Right-handed 310
Helix 121
121
C
2297 2311Right-handed alpha
Helix 122
122
C
2326 2330Right-handed 310
Helix 123
123
C
2348 2358Right-handed alpha
Helix 124
124
C
2393 2398Right-handed 310
Helix 125
125
C
2461 2484Right-handed alpha
Helix 126
126
C
2486 2497Right-handed alpha
Helix 127
127
C
2500 2511Right-handed alpha
Helix 128
128
C
2511 2520Right-handed alpha
Helix 129
129
C
2521 2525Right-handed 310
Helix 130
130
C
2527 2544Right-handed alpha
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There are 9 sheets in PDB entry 3JAC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2239 2243first strand
Strand 2
A
2225 2232anti-parallel
Strand 3
A
2315 2324anti-parallel
Strand 4
A
2335 2344anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2248 2250first strand
Strand 2
A
2281 2287anti-parallel
Strand 3
A
2443 2450anti-parallel
Strand 4
A
2375 2378parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2366 2372first strand
Strand 2
A
2399 2405anti-parallel
Strand 3
A
2430 2434anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2239 2243first strand
Strand 2
B
2225 2232anti-parallel
Strand 3
B
2315 2324anti-parallel
Strand 4
B
2335 2344anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2248 2250first strand
Strand 2
B
2281 2287anti-parallel
Strand 3
B
2443 2450anti-parallel
Strand 4
B
2375 2378parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2366 2372first strand
Strand 2
B
2399 2407anti-parallel
Strand 3
B
2428 2434anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2239 2243first strand
Strand 2
C
2225 2232anti-parallel
Strand 3
C
2315 2324anti-parallel
Strand 4
C
2335 2344anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2248 2250first strand
Strand 2
C
2281 2287anti-parallel
Strand 3
C
2443 2450anti-parallel
Strand 4
C
2375 2378parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2366 2372first strand
Strand 2
C
2399 2408anti-parallel
Strand 3
C
2427 2434anti-parallel
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