Analysis of interatomic Contacts of Structural Units in PDB entry:
3JAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JAD entry

There are 5 chains in PDB entry 3JAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 25VAL 364
B
 ALA 25VAL 364
C
 ALA 25VAL 364
D
 ALA 25VAL 364
E
 ALA 25VAL 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3JAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 35Right-handed alpha
Helix 2
2
A
104 108Right-handed 310
Helix 3
3
A
236 243Right-handed alpha
Helix 4
4
A
243 259Right-handed alpha
Helix 5
5
A
267 290Right-handed alpha
Helix 6
6
A
297 325Right-handed alpha
Helix 7
7
A
330 362Right-handed alpha
Helix 8
8
B
26 35Right-handed alpha
Helix 9
9
B
104 108Right-handed 310
Helix 10
10
B
236 243Right-handed alpha
Helix 11
11
B
243 259Right-handed alpha
Helix 12
12
B
267 290Right-handed alpha
Helix 13
13
B
297 325Right-handed alpha
Helix 14
14
B
330 362Right-handed alpha
Helix 15
15
C
26 35Right-handed alpha
Helix 16
16
C
104 108Right-handed 310
Helix 17
17
C
236 243Right-handed alpha
Helix 18
18
C
243 259Right-handed alpha
Helix 19
19
C
267 290Right-handed alpha
Helix 20
20
C
297 325Right-handed alpha
Helix 21
21
C
330 362Right-handed alpha
Helix 22
22
D
26 35Right-handed alpha
Helix 23
23
D
104 108Right-handed 310
Helix 24
24
D
236 243Right-handed alpha
Helix 25
25
D
243 259Right-handed alpha
Helix 26
26
D
267 290Right-handed alpha
Helix 27
27
D
297 325Right-handed alpha
Helix 28
28
D
330 362Right-handed alpha
Helix 29
29
E
26 35Right-handed alpha
Helix 30
30
E
104 108Right-handed 310
Helix 31
31
E
236 243Right-handed alpha
Helix 32
32
E
243 259Right-handed alpha
Helix 33
33
E
267 290Right-handed alpha
Helix 34
34
E
297 325Right-handed alpha
Helix 35
35
E
330 362Right-handed alpha
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There are 15 sheets in PDB entry 3JAD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 124first strand
Strand 2
A
141 152anti-parallel
Strand 3
A
73 85anti-parallel
Strand 4
A
53 68anti-parallel
Strand 5
A
182 185parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
141 152anti-parallel
Strand 3
A
73 85anti-parallel
Strand 4
A
53 68anti-parallel
Strand 5
A
192 194parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
165 174anti-parallel
Strand 3
A
221 234anti-parallel
Strand 4
A
203 218anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 124first strand
Strand 2
B
141 152anti-parallel
Strand 3
B
73 85anti-parallel
Strand 4
B
53 68anti-parallel
Strand 5
B
182 185parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 136first strand
Strand 2
B
141 152anti-parallel
Strand 3
B
73 85anti-parallel
Strand 4
B
53 68anti-parallel
Strand 5
B
192 194parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 116first strand
Strand 2
B
165 174anti-parallel
Strand 3
B
221 234anti-parallel
Strand 4
B
203 218anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 124first strand
Strand 2
C
141 152anti-parallel
Strand 3
C
73 85anti-parallel
Strand 4
C
53 68anti-parallel
Strand 5
C
182 185parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 136first strand
Strand 2
C
141 152anti-parallel
Strand 3
C
73 85anti-parallel
Strand 4
C
53 68anti-parallel
Strand 5
C
192 194parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 116first strand
Strand 2
C
165 174anti-parallel
Strand 3
C
221 234anti-parallel
Strand 4
C
203 218anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
119 124first strand
Strand 2
D
141 152anti-parallel
Strand 3
D
73 85anti-parallel
Strand 4
D
53 68anti-parallel
Strand 5
D
182 185parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
133 136first strand
Strand 2
D
141 152anti-parallel
Strand 3
D
73 85anti-parallel
Strand 4
D
53 68anti-parallel
Strand 5
D
192 194parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 116first strand
Strand 2
D
165 174anti-parallel
Strand 3
D
221 234anti-parallel
Strand 4
D
203 218anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
119 124first strand
Strand 2
E
141 152anti-parallel
Strand 3
E
73 85anti-parallel
Strand 4
E
53 68anti-parallel
Strand 5
E
182 185parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
133 136first strand
Strand 2
E
141 152anti-parallel
Strand 3
E
73 85anti-parallel
Strand 4
E
53 68anti-parallel
Strand 5
E
192 194parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
114 116first strand
Strand 2
E
165 174anti-parallel
Strand 3
E
221 234anti-parallel
Strand 4
E
203 218anti-parallel
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