Analysis of interatomic Contacts of Structural Units in PDB entry:
3JAE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JAE entry

There are 5 chains in PDB entry 3JAE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 25	VAL 364
B	ALA 25	VAL 364
C	ALA 25	VAL 364
D	ALA 25	VAL 364
E	ALA 25	VAL 364

There are 40 helices in PDB entry 3JAE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	25	34	Right-handed alpha
Helix 2	2	A	36	40	Right-handed 310
Helix 3	3	A	104	108	Right-handed 310
Helix 4	4	A	235	243	Right-handed alpha
Helix 5	5	A	243	260	Right-handed alpha
Helix 6	6	A	264	288	Right-handed alpha
Helix 7	7	A	297	325	Right-handed alpha
Helix 8	8	A	330	363	Right-handed alpha
Helix 9	9	B	26	34	Right-handed alpha
Helix 10	10	B	36	40	Right-handed 310
Helix 11	11	B	104	108	Right-handed 310
Helix 12	12	B	235	243	Right-handed alpha
Helix 13	13	B	243	260	Right-handed alpha
Helix 14	14	B	264	288	Right-handed alpha
Helix 15	15	B	297	325	Right-handed alpha
Helix 16	16	B	330	363	Right-handed alpha
Helix 17	17	C	26	34	Right-handed alpha
Helix 18	18	C	36	40	Right-handed 310
Helix 19	19	C	104	108	Right-handed 310
Helix 20	20	C	235	243	Right-handed alpha
Helix 21	21	C	243	260	Right-handed alpha
Helix 22	22	C	264	288	Right-handed alpha
Helix 23	23	C	297	325	Right-handed alpha
Helix 24	24	C	330	363	Right-handed alpha
Helix 25	25	D	26	34	Right-handed alpha
Helix 26	26	D	36	40	Right-handed 310
Helix 27	27	D	104	108	Right-handed 310
Helix 28	28	D	235	243	Right-handed alpha
Helix 29	29	D	243	260	Right-handed alpha
Helix 30	30	D	264	288	Right-handed alpha
Helix 31	31	D	297	325	Right-handed alpha
Helix 32	32	D	330	363	Right-handed alpha
Helix 33	33	E	26	34	Right-handed alpha
Helix 34	34	E	36	40	Right-handed 310
Helix 35	35	E	104	108	Right-handed 310
Helix 36	36	E	235	243	Right-handed alpha
Helix 37	37	E	243	260	Right-handed alpha
Helix 38	38	E	264	288	Right-handed alpha
Helix 39	39	E	297	325	Right-handed alpha
Helix 40	40	E	330	363	Right-handed alpha

There are 20 sheets in PDB entry 3JAE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	132	137	anti-parallel
Strand 3	A	141	153	anti-parallel
Strand 4	A	73	85	anti-parallel
Strand 5	A	53	65	anti-parallel
Strand 6	A	182	185	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	141	153	anti-parallel
Strand 3	A	73	85	anti-parallel
Strand 4	A	53	65	anti-parallel
Strand 5	A	192	194	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	165	173	anti-parallel
Strand 3	A	222	234	anti-parallel
Strand 4	A	203	205	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	165	173	anti-parallel
Strand 3	A	222	234	anti-parallel
Strand 4	A	211	217	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	132	137	anti-parallel
Strand 3	B	141	153	anti-parallel
Strand 4	B	73	85	anti-parallel
Strand 5	B	53	65	anti-parallel
Strand 6	B	182	185	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	141	153	anti-parallel
Strand 3	B	73	85	anti-parallel
Strand 4	B	53	65	anti-parallel
Strand 5	B	192	194	parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	165	173	anti-parallel
Strand 3	B	222	234	anti-parallel
Strand 4	B	203	205	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	165	173	anti-parallel
Strand 3	B	222	234	anti-parallel
Strand 4	B	211	217	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	132	137	anti-parallel
Strand 3	C	141	153	anti-parallel
Strand 4	C	73	85	anti-parallel
Strand 5	C	53	65	anti-parallel
Strand 6	C	182	185	parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	124	first strand
Strand 2	C	141	153	anti-parallel
Strand 3	C	73	85	anti-parallel
Strand 4	C	53	65	anti-parallel
Strand 5	C	192	194	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	116	first strand
Strand 2	C	165	173	anti-parallel
Strand 3	C	222	234	anti-parallel
Strand 4	C	203	205	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	116	first strand
Strand 2	C	165	173	anti-parallel
Strand 3	C	222	234	anti-parallel
Strand 4	C	211	217	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	132	137	anti-parallel
Strand 3	D	141	153	anti-parallel
Strand 4	D	73	85	anti-parallel
Strand 5	D	53	65	anti-parallel
Strand 6	D	182	185	parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	124	first strand
Strand 2	D	141	153	anti-parallel
Strand 3	D	73	85	anti-parallel
Strand 4	D	53	65	anti-parallel
Strand 5	D	192	194	parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	116	first strand
Strand 2	D	165	173	anti-parallel
Strand 3	D	222	234	anti-parallel
Strand 4	D	203	205	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	116	first strand
Strand 2	D	165	173	anti-parallel
Strand 3	D	222	234	anti-parallel
Strand 4	D	211	217	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	100	first strand
Strand 2	E	132	137	anti-parallel
Strand 3	E	141	153	anti-parallel
Strand 4	E	73	85	anti-parallel
Strand 5	E	53	65	anti-parallel
Strand 6	E	182	185	parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	124	first strand
Strand 2	E	141	153	anti-parallel
Strand 3	E	73	85	anti-parallel
Strand 4	E	53	65	anti-parallel
Strand 5	E	192	194	parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	116	first strand
Strand 2	E	165	173	anti-parallel
Strand 3	E	222	234	anti-parallel
Strand 4	E	203	205	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	116	first strand
Strand 2	E	165	173	anti-parallel
Strand 3	E	222	234	anti-parallel
Strand 4	E	211	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JAE

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JAE