Analysis of interatomic Contacts of Structural Units in PDB entry:
3JAV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JAV entry

There are 4 chains in PDB entry 3JAV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5ALA 2750
B
 MET 5ALA 2750
C
 MET 5ALA 2750
D
 MET 5ALA 2750
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are104 helices in PDB entry 3JAV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 57Right-handed alpha
Helix 2
2
A
67 75Right-handed alpha
Helix 3
3
A
85 109Right-handed alpha
Helix 4
4
A
235 239Right-handed 310
Helix 5
5
A
266 270Right-handed 310
Helix 6
6
A
436 461Right-handed alpha
Helix 7
7
A
466 485Right-handed alpha
Helix 8
8
A
494 501Right-handed alpha
Helix 9
9
A
506 513Right-handed alpha
Helix 10
10
A
514 525Right-handed alpha
Helix 11
11
A
534 544Right-handed alpha
Helix 12
12
A
547 564Right-handed alpha
Helix 13
13
A
567 571Right-handed 310
Helix 14
14
A
574 580Right-handed alpha
Helix 15
15
A
2274 2293Right-handed alpha
Helix 16
16
A
2312 2319Right-handed alpha
Helix 17
17
A
2320 2325Right-handed 310
Helix 18
18
A
2327 2347Right-handed alpha
Helix 19
19
A
2355 2377Right-handed alpha
Helix 20
20
A
2411 2427Right-handed alpha
Helix 21
21
A
2429 2439Right-handed alpha
Helix 22
22
A
2441 2458Right-handed alpha
Helix 23
23
A
2513 2522Right-handed alpha
Helix 24
24
A
2530 2545Right-handed alpha
Helix 25
25
A
2561 2600Right-handed alpha
Helix 26
26
A
2684 2732Right-handed alpha
Helix 27
27
B
52 57Right-handed alpha
Helix 28
28
B
67 75Right-handed alpha
Helix 29
29
B
85 109Right-handed alpha
Helix 30
30
B
235 239Right-handed 310
Helix 31
31
B
266 270Right-handed 310
Helix 32
32
B
436 461Right-handed alpha
Helix 33
33
B
466 485Right-handed alpha
Helix 34
34
B
494 501Right-handed alpha
Helix 35
35
B
506 513Right-handed alpha
Helix 36
36
B
514 525Right-handed alpha
Helix 37
37
B
534 544Right-handed alpha
Helix 38
38
B
547 564Right-handed alpha
Helix 39
39
B
567 571Right-handed 310
Helix 40
40
B
574 580Right-handed alpha
Helix 41
41
B
2274 2293Right-handed alpha
Helix 42
42
B
2312 2319Right-handed alpha
Helix 43
43
B
2320 2325Right-handed 310
Helix 44
44
B
2327 2347Right-handed alpha
Helix 45
45
B
2355 2377Right-handed alpha
Helix 46
46
B
2411 2427Right-handed alpha
Helix 47
47
B
2429 2439Right-handed alpha
Helix 48
48
B
2441 2458Right-handed alpha
Helix 49
49
B
2513 2522Right-handed alpha
Helix 50
50
B
2530 2545Right-handed alpha
Helix 51
51
B
2561 2600Right-handed alpha
Helix 52
52
B
2684 2732Right-handed alpha
Helix 53
53
C
52 57Right-handed alpha
Helix 54
54
C
67 75Right-handed alpha
Helix 55
55
C
85 109Right-handed alpha
Helix 56
56
C
235 239Right-handed 310
Helix 57
57
C
266 270Right-handed 310
Helix 58
58
C
436 461Right-handed alpha
Helix 59
59
C
466 485Right-handed alpha
Helix 60
60
C
494 501Right-handed alpha
Helix 61
61
C
506 513Right-handed alpha
Helix 62
62
C
514 525Right-handed alpha
Helix 63
63
C
534 544Right-handed alpha
Helix 64
64
C
547 564Right-handed alpha
Helix 65
65
C
567 571Right-handed 310
Helix 66
66
C
574 580Right-handed alpha
Helix 67
67
C
2274 2293Right-handed alpha
Helix 68
68
C
2312 2319Right-handed alpha
Helix 69
69
C
2320 2325Right-handed 310
Helix 70
70
C
2327 2347Right-handed alpha
Helix 71
71
C
2355 2377Right-handed alpha
Helix 72
72
C
2411 2427Right-handed alpha
Helix 73
73
C
2429 2439Right-handed alpha
Helix 74
74
C
2441 2458Right-handed alpha
Helix 75
75
C
2513 2522Right-handed alpha
Helix 76
76
C
2530 2545Right-handed alpha
Helix 77
77
C
2561 2600Right-handed alpha
Helix 78
78
C
2684 2732Right-handed alpha
Helix 79
79
D
52 57Right-handed alpha
Helix 80
80
D
67 75Right-handed alpha
Helix 81
81
D
85 109Right-handed alpha
Helix 82
82
D
235 239Right-handed 310
Helix 83
83
D
266 270Right-handed 310
Helix 84
84
D
436 461Right-handed alpha
Helix 85
85
D
466 485Right-handed alpha
Helix 86
86
D
494 501Right-handed alpha
Helix 87
87
D
506 513Right-handed alpha
Helix 88
88
D
514 525Right-handed alpha
Helix 89
89
D
534 544Right-handed alpha
Helix 90
90
D
547 564Right-handed alpha
Helix 91
91
D
567 571Right-handed 310
Helix 92
92
D
574 580Right-handed alpha
Helix 93
93
D
2274 2293Right-handed alpha
Helix 94
94
D
2312 2319Right-handed alpha
Helix 95
95
D
2320 2325Right-handed 310
Helix 96
96
D
2327 2347Right-handed alpha
Helix 97
97
D
2355 2377Right-handed alpha
Helix 98
98
D
2411 2427Right-handed alpha
Helix 99
99
D
2428 2439Right-handed alpha
Helix 100
100
D
2441 2458Right-handed alpha
Helix 101
101
D
2513 2522Right-handed alpha
Helix 102
102
D
2530 2545Right-handed alpha
Helix 103
103
D
2561 2600Right-handed alpha
Helix 104
104
D
2684 2732Right-handed alpha
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There are 12 sheets in PDB entry 3JAV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
123 124anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 255first strand
Strand 2
A
260 263anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 371first strand
Strand 2
A
389 391anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 60first strand
Strand 2
B
123 124anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 255first strand
Strand 2
B
260 263anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 371first strand
Strand 2
B
389 391anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 60first strand
Strand 2
C
123 124anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
252 255first strand
Strand 2
C
260 263anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
369 371first strand
Strand 2
C
389 391anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 60first strand
Strand 2
D
123 124anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
252 255first strand
Strand 2
D
260 263anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
369 371first strand
Strand 2
D
389 391anti-parallel
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