Analysis of interatomic Contacts of Structural Units in PDB entry:
3JAW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JAW entry

There are 4 chains in PDB entry 3JAW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 441
B
 MET 1THR 439
C
 MET 1GLU 441
D
 MET 1THR 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 3JAW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 29Right-handed alpha
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
72 81Right-handed alpha
Helix 4
4
A
88 90Right-handed 310
Helix 5
5
A
102 108Right-handed alpha
Helix 6
6
A
110 113Right-handed 310
Helix 7
7
A
114 128Right-handed alpha
Helix 8
8
A
143 161Right-handed alpha
Helix 9
9
A
182 195Right-handed alpha
Helix 10
10
A
196 198Right-handed 310
Helix 11
11
A
206 218Right-handed alpha
Helix 12
12
A
223 244Right-handed alpha
Helix 13
13
A
251 260Right-handed alpha
Helix 14
14
A
277 282Right-handed alpha
Helix 15
15
A
287 297Right-handed alpha
Helix 16
16
A
298 301Right-handed 310
Helix 17
17
A
306 310Right-handed 310
Helix 18
18
A
324 338Right-handed alpha
Helix 19
19
A
383 400Right-handed alpha
Helix 20
20
A
404 411Right-handed alpha
Helix 21
21
A
414 437Right-handed alpha
Helix 22
22
B
10 28Right-handed alpha
Helix 23
23
B
41 48Right-handed alpha
Helix 24
24
B
49 51Right-handed 310
Helix 25
25
B
72 81Right-handed alpha
Helix 26
26
B
83 87Right-handed 310
Helix 27
27
B
88 90Right-handed 310
Helix 28
28
B
102 108Right-handed alpha
Helix 29
29
B
109 129Right-handed alpha
Helix 30
30
B
144 161Right-handed alpha
Helix 31
31
B
182 198Right-handed alpha
Helix 32
32
B
205 216Right-handed alpha
Helix 33
33
B
223 244Right-handed alpha
Helix 34
34
B
251 260Right-handed alpha
Helix 35
35
B
287 296Right-handed alpha
Helix 36
36
B
297 301Right-handed 310
Helix 37
37
B
306 310Right-handed 310
Helix 38
38
B
324 339Right-handed alpha
Helix 39
39
B
340 343Right-handed 310
Helix 40
40
B
384 400Right-handed alpha
Helix 41
41
B
404 410Right-handed alpha
Helix 42
42
B
414 438Right-handed alpha
Helix 43
43
C
10 29Right-handed alpha
Helix 44
44
C
47 51Right-handed 310
Helix 45
45
C
72 81Right-handed alpha
Helix 46
46
C
88 90Right-handed 310
Helix 47
47
C
102 108Right-handed alpha
Helix 48
48
C
110 113Right-handed 310
Helix 49
49
C
114 128Right-handed alpha
Helix 50
50
C
143 161Right-handed alpha
Helix 51
51
C
182 195Right-handed alpha
Helix 52
52
C
196 198Right-handed 310
Helix 53
53
C
205 218Right-handed alpha
Helix 54
54
C
223 244Right-handed alpha
Helix 55
55
C
251 260Right-handed alpha
Helix 56
56
C
278 283Right-handed alpha
Helix 57
57
C
287 297Right-handed alpha
Helix 58
58
C
298 301Right-handed 310
Helix 59
59
C
306 310Right-handed 310
Helix 60
60
C
324 338Right-handed alpha
Helix 61
61
C
383 400Right-handed alpha
Helix 62
62
C
404 411Right-handed alpha
Helix 63
63
C
414 437Right-handed alpha
Helix 64
64
D
10 28Right-handed alpha
Helix 65
65
D
41 48Right-handed alpha
Helix 66
66
D
49 51Right-handed 310
Helix 67
67
D
72 81Right-handed alpha
Helix 68
68
D
83 87Right-handed 310
Helix 69
69
D
88 90Right-handed 310
Helix 70
70
D
102 108Right-handed alpha
Helix 71
71
D
109 129Right-handed alpha
Helix 72
72
D
144 161Right-handed alpha
Helix 73
73
D
182 198Right-handed alpha
Helix 74
74
D
206 216Right-handed alpha
Helix 75
75
D
223 244Right-handed alpha
Helix 76
76
D
251 260Right-handed alpha
Helix 77
77
D
287 296Right-handed alpha
Helix 78
78
D
297 301Right-handed 310
Helix 79
79
D
306 310Right-handed 310
Helix 80
80
D
324 339Right-handed alpha
Helix 81
81
D
340 343Right-handed 310
Helix 82
82
D
384 400Right-handed alpha
Helix 83
83
D
404 410Right-handed alpha
Helix 84
84
D
414 438Right-handed alpha
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There are 10 sheets in PDB entry 3JAW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
4 9parallel
Strand 4
A
134 140parallel
Strand 5
A
165 172parallel
Strand 6
A
200 205parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
351 356parallel
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There are 11 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 171parallel
Strand 6
B
200 204parallel
Strand 7
B
267 273parallel
Strand 8
B
373 381anti-parallel
Strand 9
B
312 321anti-parallel
Strand 10
B
351 356parallel
Strand 11
B
246 248anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
60 63anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
65 69parallel
Strand 3
C
4 9parallel
Strand 4
C
134 140parallel
Strand 5
C
165 171parallel
Strand 6
C
200 204parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 56first strand
Strand 2
C
60 63anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
246 248first strand
Strand 2
C
351 356anti-parallel
Strand 3
C
312 321parallel
Strand 4
C
373 381anti-parallel
Strand 5
C
269 273anti-parallel
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There are 11 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 94first strand
Strand 2
D
65 69parallel
Strand 3
D
3 9parallel
Strand 4
D
132 140parallel
Strand 5
D
165 172parallel
Strand 6
D
200 205parallel
Strand 7
D
267 273parallel
Strand 8
D
373 381anti-parallel
Strand 9
D
312 321anti-parallel
Strand 10
D
351 356parallel
Strand 11
D
246 248anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 56first strand
Strand 2
D
60 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il