Analysis of interatomic Contacts of Structural Units in PDB entry:
3JB5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JB5 entry

There are 7 chains in PDB entry 3JB5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 4	GLU 303
B	ASP 4	GLU 303
C	ASP 4	GLU 303
D	ASP 4	GLU 303
E	ASP 4	GLU 303
F	ASP 4	GLU 303
G	ASP 4	GLU 303

There are 48 helices in PDB entry 3JB5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	30	35	Right-handed alpha
Helix 2	2	A	90	99	Right-handed alpha
Helix 3	3	A	108	113	Right-handed alpha
Helix 4	4	A	115	126	Right-handed alpha
Helix 5	5	A	157	165	Right-handed alpha
Helix 6	6	A	183	188	Right-handed alpha
Helix 7	7	A	225	228	Right-handed 310
Helix 8	8	B	30	35	Right-handed alpha
Helix 9	9	B	90	99	Right-handed alpha
Helix 10	10	B	102	107	Right-handed alpha
Helix 11	11	B	107	126	Right-handed alpha
Helix 12	12	B	155	164	Right-handed alpha
Helix 13	13	B	164	169	Right-handed alpha
Helix 14	14	B	181	190	Right-handed alpha
Helix 15	15	C	30	35	Right-handed alpha
Helix 16	16	C	91	99	Right-handed alpha
Helix 17	17	C	107	114	Right-handed alpha
Helix 18	18	C	114	124	Right-handed alpha
Helix 19	19	C	157	170	Right-handed alpha
Helix 20	20	C	181	190	Right-handed alpha
Helix 21	21	C	266	270	Right-handed 310
Helix 22	22	C	294	296	Right-handed 310
Helix 23	23	D	90	98	Right-handed alpha
Helix 24	24	D	102	107	Right-handed alpha
Helix 25	25	D	107	127	Right-handed alpha
Helix 26	26	D	156	169	Right-handed alpha
Helix 27	27	D	181	186	Right-handed alpha
Helix 28	28	D	245	247	Right-handed 310
Helix 29	29	E	30	35	Right-handed alpha
Helix 30	30	E	90	95	Right-handed alpha
Helix 31	31	E	108	126	Right-handed alpha
Helix 32	32	E	157	165	Right-handed alpha
Helix 33	33	E	183	188	Right-handed alpha
Helix 34	34	F	90	99	Right-handed alpha
Helix 35	35	F	102	107	Right-handed alpha
Helix 36	36	F	108	114	Right-handed alpha
Helix 37	37	F	116	127	Right-handed alpha
Helix 38	38	F	155	168	Right-handed alpha
Helix 39	39	F	181	190	Right-handed alpha
Helix 40	40	F	266	270	Right-handed 310
Helix 41	41	F	273	278	Right-handed alpha
Helix 42	42	G	30	35	Right-handed alpha
Helix 43	43	G	90	99	Right-handed alpha
Helix 44	44	G	102	107	Right-handed alpha
Helix 45	45	G	107	127	Right-handed alpha
Helix 46	46	G	155	169	Right-handed alpha
Helix 47	47	G	181	186	Right-handed alpha
Helix 48	48	G	225	228	Right-handed 310

There are 27 sheets in PDB entry 3JB5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	F	45	50	parallel
Strand 3	F	72	77	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	A	45	51	anti-parallel
Strand 3	A	76	77	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	A	45	51	anti-parallel
Strand 3	B	16	22	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	B	80	89	anti-parallel
Strand 3	B	279	292	anti-parallel
Strand 4	B	249	262	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	256	first strand
Strand 2	A	279	292	anti-parallel
Strand 3	A	260	262	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	256	first strand
Strand 2	A	279	292	anti-parallel
Strand 3	A	80	89	anti-parallel
Strand 4	F	57	59	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	151	first strand
Strand 2	A	298	302	parallel
Strand 3	A	241	244	anti-parallel
Strand 4	A	177	180	anti-parallel
Strand 5	A	220	223	parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	77	first strand
Strand 2	B	45	50	anti-parallel
Strand 3	C	16	22	parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	59	first strand
Strand 2	C	80	89	anti-parallel
Strand 3	C	279	291	anti-parallel
Strand 4	C	250	256	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	59	first strand
Strand 2	C	80	89	anti-parallel
Strand 3	C	279	291	anti-parallel
Strand 4	C	260	262	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	298	302	parallel
Strand 3	B	239	244	anti-parallel
Strand 4	B	177	180	anti-parallel
Strand 5	B	220	223	parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	77	first strand
Strand 2	C	45	50	anti-parallel
Strand 3	D	16	17	parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	D	80	89	anti-parallel
Strand 3	D	279	292	anti-parallel
Strand 4	D	249	256	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	D	80	89	anti-parallel
Strand 3	D	279	292	anti-parallel
Strand 4	D	260	262	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	151	first strand
Strand 2	C	298	302	parallel
Strand 3	C	239	244	anti-parallel
Strand 4	C	177	180	anti-parallel
Strand 5	C	219	223	parallel
Strand 6	C	215	216	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	77	first strand
Strand 2	D	45	50	anti-parallel
Strand 3	E	16	22	parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	E	80	89	anti-parallel
Strand 3	E	279	292	anti-parallel
Strand 4	E	249	256	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	E	80	89	anti-parallel
Strand 3	E	279	292	anti-parallel
Strand 4	E	260	262	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	216	first strand
Strand 2	D	219	223	anti-parallel
Strand 3	D	178	180	parallel
Strand 4	D	241	243	anti-parallel
Strand 5	D	299	300	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	77	first strand
Strand 2	E	45	51	anti-parallel
Strand 3	F	16	22	parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	59	first strand
Strand 2	F	80	89	anti-parallel
Strand 3	F	279	292	anti-parallel
Strand 4	F	249	260	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	215	216	first strand
Strand 2	E	219	223	anti-parallel
Strand 3	E	177	180	parallel
Strand 4	E	241	244	anti-parallel
Strand 5	E	298	300	anti-parallel

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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	151	first strand
Strand 2	F	298	302	parallel
Strand 3	F	239	244	anti-parallel
Strand 4	F	177	180	anti-parallel
Strand 5	F	219	223	parallel
Strand 6	F	215	216	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	50	first strand
Strand 2	G	72	77	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	80	89	first strand
Strand 2	G	279	292	anti-parallel
Strand 3	G	249	256	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	80	89	first strand
Strand 2	G	279	292	anti-parallel
Strand 3	G	260	262	anti-parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	149	151	first strand
Strand 2	G	298	302	parallel
Strand 3	G	241	244	anti-parallel
Strand 4	G	177	180	anti-parallel
Strand 5	G	220	223	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JB5

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JB5