Analysis of interatomic Contacts of Structural Units in PDB entry:
3JB6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JB6 entry

There are 4 chains in PDB entry 3JB6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5ASN 1224
B
 PHE 2VAL 560
C
 VAL 114THR 134
D
 PRO 111ALA 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 85 helices in PDB entry 3JB6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 9Right-handed 310
Helix 2
2
A
10 16Right-handed alpha
Helix 3
3
A
19 34Right-handed alpha
Helix 4
4
A
36 45Right-handed alpha
Helix 5
5
A
72 77Right-handed alpha
Helix 6
6
A
82 86Right-handed 310
Helix 7
7
A
120 135Right-handed alpha
Helix 8
8
A
144 161Right-handed alpha
Helix 9
9
A
165 176Right-handed alpha
Helix 10
10
A
202 204Right-handed 310
Helix 11
11
A
205 219Right-handed alpha
Helix 12
12
A
223 238Right-handed alpha
Helix 13
13
A
241 255Right-handed alpha
Helix 14
14
A
256 264Right-handed alpha
Helix 15
15
A
289 294Right-handed alpha
Helix 16
16
A
294 307Right-handed alpha
Helix 17
17
A
308 321Right-handed alpha
Helix 18
18
A
324 339Right-handed alpha
Helix 19
19
A
352 358Right-handed alpha
Helix 20
20
A
388 398Right-handed alpha
Helix 21
21
A
400 411Right-handed alpha
Helix 22
22
A
412 424Right-handed alpha
Helix 23
23
A
450 460Right-handed alpha
Helix 24
24
A
462 472Right-handed alpha
Helix 25
25
A
495 500Right-handed alpha
Helix 26
26
A
500 508Right-handed alpha
Helix 27
27
A
509 513Right-handed 310
Helix 28
28
A
531 536Right-handed alpha
Helix 29
29
A
550 555Right-handed alpha
Helix 30
30
A
556 574Right-handed alpha
Helix 31
31
A
603 615Right-handed alpha
Helix 32
32
A
641 666Right-handed alpha
Helix 33
33
A
689 707Right-handed alpha
Helix 34
34
A
736 739Right-handed 310
Helix 35
35
A
752 767Right-handed alpha
Helix 36
36
A
768 771Right-handed 310
Helix 37
37
A
773 788Right-handed alpha
Helix 38
38
A
800 809Right-handed alpha
Helix 39
39
A
833 839Right-handed 310
Helix 40
40
A
867 871Right-handed 310
Helix 41
41
A
872 878Right-handed alpha
Helix 42
42
A
880 887Right-handed alpha
Helix 43
43
A
893 900Right-handed alpha
Helix 44
44
A
901 911Right-handed alpha
Helix 45
45
A
918 923Right-handed alpha
Helix 46
46
A
932 938Right-handed alpha
Helix 47
47
A
942 959Right-handed alpha
Helix 48
48
A
970 980Right-handed alpha
Helix 49
49
A
995 1009Right-handed alpha
Helix 50
50
A
1014 1020Right-handed 310
Helix 51
51
A
1035 1040Right-handed alpha
Helix 52
52
A
1053 1062Right-handed alpha
Helix 53
53
A
1066 1081Right-handed alpha
Helix 54
54
A
1090 1103Right-handed alpha
Helix 55
55
A
1106 1114Right-handed alpha
Helix 56
56
A
1119 1135Right-handed alpha
Helix 57
57
A
1154 1160Right-handed 310
Helix 58
58
A
1166 1172Right-handed alpha
Helix 59
59
A
1175 1190Right-handed alpha
Helix 60
60
A
1191 1193Right-handed 310
Helix 61
61
A
1203 1211Right-handed alpha
Helix 62
62
A
1214 1219Right-handed alpha
Helix 63
63
B
9 16Right-handed alpha
Helix 64
64
B
43 63Right-handed alpha
Helix 65
65
B
69 79Right-handed alpha
Helix 66
66
B
135 149Right-handed alpha
Helix 67
67
B
161 166Right-handed alpha
Helix 68
68
B
169 177Right-handed alpha
Helix 69
69
B
195 202Right-handed alpha
Helix 70
70
B
235 243Right-handed alpha
Helix 71
71
B
289 296Right-handed alpha
Helix 72
72
B
327 341Right-handed alpha
Helix 73
73
B
358 375Right-handed alpha
Helix 74
74
B
384 394Right-handed alpha
Helix 75
75
B
402 410Right-handed alpha
Helix 76
76
B
416 428Right-handed alpha
Helix 77
77
B
433 440Right-handed alpha
Helix 78
78
B
441 461Right-handed alpha
Helix 79
79
B
467 477Right-handed alpha
Helix 80
80
B
491 497Right-handed 310
Helix 81
81
B
512 520Right-handed alpha
Helix 82
82
B
524 538Right-handed alpha
Helix 83
83
B
546 557Right-handed alpha
Helix 84
84
C
120 131Right-handed alpha
Helix 85
85
D
112 126Right-handed alpha
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There are 15 sheets in PDB entry 3JB6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
64 68anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
191 194anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 272first strand
Strand 2
A
278 285anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 384first strand
Strand 2
A
370 375anti-parallel
Strand 3
A
585 591anti-parallel
Strand 4
A
598 602anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 479first strand
Strand 2
A
487 489anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
672 677first strand
Strand 2
A
681 687anti-parallel
Strand 3
A
541 547anti-parallel
Strand 4
A
714 716anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 579first strand
Strand 2
A
582 583anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
621 624first strand
Strand 2
A
628 631anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
719 721first strand
Strand 2
A
725 728anti-parallel
Strand 3
A
733 734anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
813 816first strand
Strand 2
A
825 831anti-parallel
Strand 3
A
791 797anti-parallel
Strand 4
A
992 994parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1022 1030first strand
Strand 2
A
1196 1202anti-parallel
Strand 3
A
1162 1163parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 159first strand
Strand 2
B
182 184parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 208first strand
Strand 2
B
226 230parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 299first strand
Strand 2
B
267 271anti-parallel
Strand 3
B
255 260anti-parallel
Strand 4
B
313 319anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 381first strand
Strand 2
B
484 489parallel
Strand 3
B
347 352parallel
Strand 4
B
504 507parallel
Strand 5
B
543 545parallel
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