Analysis of interatomic Contacts of Structural Units in PDB entry:
3JB7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JB7 entry

There are 6 chains in PDB entry 3JB7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5GLY 1211
B
 PHE 2VAL 560
C
 VAL 114THR 134
t
 G 0 G 5
m
 C 1 C 5
D
 PRO 111ALA 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 91 helices in PDB entry 3JB7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 9Right-handed 310
Helix 2
2
A
10 16Right-handed alpha
Helix 3
3
A
21 36Right-handed alpha
Helix 4
4
A
36 45Right-handed alpha
Helix 5
5
A
72 77Right-handed alpha
Helix 6
6
A
82 86Right-handed 310
Helix 7
7
A
108 112Right-handed 310
Helix 8
8
A
120 134Right-handed alpha
Helix 9
9
A
144 161Right-handed alpha
Helix 10
10
A
165 175Right-handed alpha
Helix 11
11
A
202 220Right-handed alpha
Helix 12
12
A
223 238Right-handed alpha
Helix 13
13
A
241 255Right-handed alpha
Helix 14
14
A
256 265Right-handed alpha
Helix 15
15
A
289 304Right-handed alpha
Helix 16
16
A
308 322Right-handed alpha
Helix 17
17
A
324 339Right-handed alpha
Helix 18
18
A
348 358Right-handed alpha
Helix 19
19
A
388 398Right-handed alpha
Helix 20
20
A
400 409Right-handed alpha
Helix 21
21
A
412 423Right-handed alpha
Helix 22
22
A
440 446Right-handed 310
Helix 23
23
A
449 456Right-handed alpha
Helix 24
24
A
463 470Right-handed alpha
Helix 25
25
A
493 510Right-handed alpha
Helix 26
26
A
511 514Right-handed 310
Helix 27
27
A
525 528Right-handed 310
Helix 28
28
A
529 538Right-handed alpha
Helix 29
29
A
556 574Right-handed alpha
Helix 30
30
A
603 615Right-handed alpha
Helix 31
31
A
645 666Right-handed alpha
Helix 32
32
A
689 707Right-handed alpha
Helix 33
33
A
752 765Right-handed alpha
Helix 34
34
A
773 788Right-handed alpha
Helix 35
35
A
800 809Right-handed alpha
Helix 36
36
A
833 838Right-handed 310
Helix 37
37
A
867 871Right-handed 310
Helix 38
38
A
872 879Right-handed alpha
Helix 39
39
A
880 887Right-handed alpha
Helix 40
40
A
893 901Right-handed alpha
Helix 41
41
A
901 910Right-handed alpha
Helix 42
42
A
912 925Right-handed alpha
Helix 43
43
A
928 940Right-handed alpha
Helix 44
44
A
948 954Right-handed alpha
Helix 45
45
A
955 957Right-handed 310
Helix 46
46
A
969 971Right-handed 310
Helix 47
47
A
972 978Right-handed alpha
Helix 48
48
A
984 986Right-handed 310
Helix 49
49
A
987 992Right-handed alpha
Helix 50
50
A
993 997Right-handed 310
Helix 51
51
A
999 1004Right-handed alpha
Helix 52
52
A
1013 1021Right-handed 310
Helix 53
53
A
1034 1040Right-handed alpha
Helix 54
54
A
1045 1049Right-handed 310
Helix 55
55
A
1052 1062Right-handed alpha
Helix 56
56
A
1065 1080Right-handed alpha
Helix 57
57
A
1091 1095Right-handed alpha
Helix 58
58
A
1095 1101Right-handed alpha
Helix 59
59
A
1102 1104Right-handed 310
Helix 60
60
A
1105 1114Right-handed alpha
Helix 61
61
A
1116 1126Right-handed alpha
Helix 62
62
A
1153 1159Right-handed 310
Helix 63
63
A
1164 1168Right-handed 310
Helix 64
64
A
1173 1175Right-handed 310
Helix 65
65
A
1176 1188Right-handed alpha
Helix 66
66
A
1202 1211Right-handed alpha
Helix 67
67
B
10 17Right-handed alpha
Helix 68
68
B
41 61Right-handed alpha
Helix 69
69
B
62 64Right-handed 310
Helix 70
70
B
69 78Right-handed alpha
Helix 71
71
B
132 147Right-handed alpha
Helix 72
72
B
161 167Right-handed alpha
Helix 73
73
B
169 177Right-handed alpha
Helix 74
74
B
195 202Right-handed alpha
Helix 75
75
B
235 243Right-handed alpha
Helix 76
76
B
244 248Right-handed 310
Helix 77
77
B
289 296Right-handed alpha
Helix 78
78
B
325 341Right-handed alpha
Helix 79
79
B
358 375Right-handed alpha
Helix 80
80
B
384 394Right-handed alpha
Helix 81
81
B
402 409Right-handed alpha
Helix 82
82
B
416 429Right-handed alpha
Helix 83
83
B
433 440Right-handed alpha
Helix 84
84
B
441 461Right-handed alpha
Helix 85
85
B
467 477Right-handed alpha
Helix 86
86
B
491 496Right-handed 310
Helix 87
87
B
512 520Right-handed alpha
Helix 88
88
B
524 536Right-handed alpha
Helix 89
89
B
546 557Right-handed alpha
Helix 90
90
C
120 131Right-handed alpha
Helix 91
91
D
112 126Right-handed alpha
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There are 16 sheets in PDB entry 3JB7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
64 68anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
191 194anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 272first strand
Strand 2
A
278 285anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 384first strand
Strand 2
A
370 374anti-parallel
Strand 3
A
585 591anti-parallel
Strand 4
A
598 602anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 479first strand
Strand 2
A
487 490anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 544first strand
Strand 2
A
682 687anti-parallel
Strand 3
A
675 677anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 548first strand
Strand 2
A
711 712anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
621 624first strand
Strand 2
A
628 631anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
719 720first strand
Strand 2
A
727 728anti-parallel
Strand 3
A
731 732anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
795 797first strand
Strand 2
A
825 830anti-parallel
Strand 3
A
814 816anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1022 1025first strand
Strand 2
A
1197 1200anti-parallel
Strand 3
A
1161 1162parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 159first strand
Strand 2
B
182 184parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 208first strand
Strand 2
B
226 230parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
255 261anti-parallel
Strand 3
B
269 271anti-parallel
Strand 4
B
297 299anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
255 261anti-parallel
Strand 3
B
313 319anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
485 489first strand
Strand 2
B
348 352parallel
Strand 3
B
504 507parallel
Strand 4
B
544 545parallel
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