Analysis of interatomic Contacts of Structural Units in PDB entry:
3JB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JB8 entry

There are 3 chains in PDB entry 3JB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 45PRO 229
B
 GLY 45ALA 226
C
 GLY 45LEU 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3JB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
88 96Right-handed alpha
Helix 2
2
A
137 142Right-handed alpha
Helix 3
3
A
172 179Right-handed alpha
Helix 4
4
A
181 186Right-handed alpha
Helix 5
5
B
88 96Right-handed alpha
Helix 6
6
B
137 142Right-handed alpha
Helix 7
7
B
172 179Right-handed alpha
Helix 8
8
B
181 186Right-handed alpha
Helix 9
9
C
88 96Right-handed alpha
Helix 10
10
C
137 142Right-handed alpha
Helix 11
11
C
172 179Right-handed alpha
Helix 12
12
C
181 186Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3JB8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 59first strand
Strand 2
A
204 218anti-parallel
Strand 3
A
100 108anti-parallel
Strand 4
A
159 160anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
193 197anti-parallel
Strand 3
A
123 125anti-parallel
Strand 4
A
147 149anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 59first strand
Strand 2
B
204 218anti-parallel
Strand 3
B
100 108anti-parallel
Strand 4
B
159 160anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
193 197anti-parallel
Strand 3
B
123 125anti-parallel
Strand 4
B
147 149anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 59first strand
Strand 2
C
204 218anti-parallel
Strand 3
C
100 108anti-parallel
Strand 4
C
159 160anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 68first strand
Strand 2
C
193 197anti-parallel
Strand 3
C
123 125anti-parallel
Strand 4
C
147 149anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il