Analysis of interatomic Contacts of Structural Units in PDB entry:
3JBA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JBA entry

There are 8 chains in PDB entry 3JBA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 ASP 1ALA 109
H
 SER 7SER 112
B
 ALA 9LYS 486
A
 ALA 9LYS 486
E
 ALA 9LYS 486
D
 ALA 9LYS 486
C
 ALA 9LYS 486
F
 ALA 9LYS 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3JBA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
79 83Right-handed 310
Helix 2
2
H
28 32Right-handed 310
Helix 3
3
H
83 87Right-handed 310
Helix 4
4
B
79 83Right-handed 310
Helix 5
5
B
221 226Right-handed alpha
Helix 6
6
B
233 238Right-handed alpha
Helix 7
7
B
280 284Right-handed 310
Helix 8
8
B
384 396Right-handed alpha
Helix 9
9
B
396 403Right-handed alpha
Helix 10
10
B
462 474Right-handed alpha
Helix 11
11
A
222 226Right-handed 310
Helix 12
12
A
233 239Right-handed alpha
Helix 13
13
A
280 285Right-handed 310
Helix 14
14
A
384 395Right-handed alpha
Helix 15
15
A
396 403Right-handed alpha
Helix 16
16
A
462 473Right-handed alpha
Helix 17
17
E
221 227Right-handed alpha
Helix 18
18
E
233 239Right-handed alpha
Helix 19
19
E
280 285Right-handed 310
Helix 20
20
E
384 395Right-handed alpha
Helix 21
21
E
396 403Right-handed alpha
Helix 22
22
E
462 472Right-handed alpha
Helix 23
23
D
79 83Right-handed 310
Helix 24
24
D
221 226Right-handed alpha
Helix 25
25
D
233 240Right-handed alpha
Helix 26
26
D
280 284Right-handed 310
Helix 27
27
D
384 396Right-handed alpha
Helix 28
28
D
396 403Right-handed alpha
Helix 29
29
D
462 472Right-handed alpha
Helix 30
30
C
233 239Right-handed alpha
Helix 31
31
C
280 285Right-handed 310
Helix 32
32
C
384 396Right-handed alpha
Helix 33
33
C
396 401Right-handed alpha
Helix 34
34
C
462 473Right-handed alpha
Helix 35
35
F
221 226Right-handed alpha
Helix 36
36
F
233 239Right-handed alpha
Helix 37
37
F
280 285Right-handed 310
Helix 38
38
F
384 395Right-handed alpha
Helix 39
39
F
396 403Right-handed alpha
Helix 40
40
F
462 473Right-handed alpha
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There are 56 sheets in PDB entry 3JBA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA, BB, BC, BD,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
102 107parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
102 107parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
97 98anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 98anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
57 58anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 98anti-parallel
Strand 4
H
100 103anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
18 23first strand
Strand 2
H
77 82anti-parallel
Strand 3
H
68 72anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 38first strand
Strand 2
B
360 382anti-parallel
Strand 3
B
96 108anti-parallel
Strand 4
B
310 312anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 46first strand
Strand 2
B
360 382anti-parallel
Strand 3
B
341 347anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
60 62anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 296first strand
Strand 2
B
252 262anti-parallel
Strand 3
B
153 160anti-parallel
Strand 4
B
328 334anti-parallel
Strand 5
B
71 76anti-parallel
Strand 6
B
447 450parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 296first strand
Strand 2
B
252 262anti-parallel
Strand 3
A
300 301anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 123first strand
Strand 2
B
145 149anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
B
165 167anti-parallel
Strand 3
B
229 232anti-parallel
Strand 4
B
200 201parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 171first strand
Strand 2
B
188 190anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
A
360 362parallel
Strand 3
A
345 347anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 301first strand
Strand 2
C
248 262anti-parallel
Strand 3
C
291 296anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 301first strand
Strand 2
C
248 262anti-parallel
Strand 3
C
153 160anti-parallel
Strand 4
C
328 335anti-parallel
Strand 5
C
71 76anti-parallel
Strand 6
C
447 450parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 37first strand
Strand 2
A
365 382anti-parallel
Strand 3
A
96 108anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
365 382anti-parallel
Strand 3
A
341 342anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
60 62anti-parallel
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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 296first strand
Strand 2
A
248 262anti-parallel
Strand 3
A
153 160anti-parallel
Strand 4
A
328 335anti-parallel
Strand 5
A
71 76anti-parallel
Strand 6
A
447 450parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 296first strand
Strand 2
A
248 262anti-parallel
Strand 3
E
300 301anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 124first strand
Strand 2
A
144 149anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 194first strand
Strand 2
A
165 171anti-parallel
Strand 3
A
229 232anti-parallel
Strand 4
A
200 201parallel
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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
E
360 382parallel
Strand 3
E
28 38anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
28 38first strand
Strand 2
E
360 382anti-parallel
Strand 3
E
42 46anti-parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
42 46first strand
Strand 2
E
360 382anti-parallel
Strand 3
E
96 108anti-parallel
Strand 4
E
311 312anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
311 312first strand
Strand 2
E
96 108anti-parallel
Strand 3
E
360 382anti-parallel
Strand 4
E
341 347anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
341 347first strand
Strand 2
E
360 382anti-parallel
Strand 3
A
266 267parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
52 53first strand
Strand 2
E
60 62anti-parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
291 296first strand
Strand 2
E
248 262anti-parallel
Strand 3
E
153 160anti-parallel
Strand 4
E
328 335anti-parallel
Strand 5
E
71 76anti-parallel
Strand 6
E
447 450parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
291 296first strand
Strand 2
E
248 262anti-parallel
Strand 3
D
299 301anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
119 124first strand
Strand 2
E
144 148anti-parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
188 194first strand
Strand 2
E
165 171anti-parallel
Strand 3
E
231 232anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 38first strand
Strand 2
D
361 382anti-parallel
Strand 3
D
96 108anti-parallel
Strand 4
D
309 311anti-parallel
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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 46first strand
Strand 2
D
361 382anti-parallel
Strand 3
D
341 346anti-parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 53first strand
Strand 2
D
60 62anti-parallel
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There are 6 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
447 450first strand
Strand 2
D
71 76parallel
Strand 3
D
328 335anti-parallel
Strand 4
D
153 160anti-parallel
Strand 5
D
248 255anti-parallel
Strand 6
C
300 301anti-parallel
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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 124first strand
Strand 2
D
144 149anti-parallel
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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
189 194first strand
Strand 2
D
165 170anti-parallel
Strand 3
D
231 232anti-parallel
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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
259 262first strand
Strand 2
D
291 294anti-parallel
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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 38first strand
Strand 2
C
360 382anti-parallel
Strand 3
C
96 108anti-parallel
Strand 4
C
310 311anti-parallel
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There are 3 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 46first strand
Strand 2
C
360 382anti-parallel
Strand 3
C
340 347anti-parallel
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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 53first strand
Strand 2
C
60 62anti-parallel
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There are 2 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 124first strand
Strand 2
C
144 150anti-parallel
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There are 4 strands in AT sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 194first strand
Strand 2
C
165 171anti-parallel
Strand 3
C
229 232anti-parallel
Strand 4
C
200 201parallel
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There are 3 strands in AU sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
28 38first strand
Strand 2
F
360 382anti-parallel
Strand 3
F
42 46anti-parallel
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There are 4 strands in AV sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
42 46first strand
Strand 2
F
360 382anti-parallel
Strand 3
F
96 108anti-parallel
Strand 4
F
311 312anti-parallel
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There are 3 strands in AW sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
311 312first strand
Strand 2
F
96 108anti-parallel
Strand 3
F
323 324anti-parallel
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There are 4 strands in AX sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
323 324first strand
Strand 2
F
96 108anti-parallel
Strand 3
F
360 382anti-parallel
Strand 4
F
341 347anti-parallel
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There are 3 strands in AY sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
341 347first strand
Strand 2
F
360 382anti-parallel
Strand 3
F
28 38anti-parallel
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There are 2 strands in AZ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
52 53first strand
Strand 2
F
60 62anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
248 254first strand
Strand 2
F
153 160anti-parallel
Strand 3
F
328 334anti-parallel
Strand 4
F
71 76anti-parallel
Strand 5
F
447 450parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
118 124first strand
Strand 2
F
144 149anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
188 194first strand
Strand 2
F
165 171anti-parallel
Strand 3
F
231 232anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
256 262first strand
Strand 2
F
291 296anti-parallel
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