Analysis of interatomic Contacts of Structural Units in PDB entry:
3JBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JBE entry

There are 5 chains in PDB entry 3JBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 ALA 20TYR 302
2
 ALA 6GLN 272
3
 GLY 1ALA 235
4
 GLY 2ASN 69
7
 GLN 1HIS 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3JBE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
46 50Right-handed 310
Helix 2
2
1
56 61Right-handed alpha
Helix 3
3
1
71 75Right-handed 310
Helix 4
4
1
76 82Right-handed alpha
Helix 5
5
1
111 114Right-handed 310
Helix 6
6
1
115 124Right-handed alpha
Helix 7
7
1
172 177Right-handed 310
Helix 8
8
1
221 226Right-handed alpha
Helix 9
9
1
232 236Right-handed 310
Helix 10
10
2
35 37Right-handed 310
Helix 11
11
2
56 60Right-handed 310
Helix 12
12
2
83 88Right-handed 310
Helix 13
13
2
89 98Right-handed alpha
Helix 14
14
2
144 149Right-handed alpha
Helix 15
15
2
177 181Right-handed 310
Helix 16
16
2
186 193Right-handed 310
Helix 17
17
3
42 48Right-handed alpha
Helix 18
18
3
64 69Right-handed 310
Helix 19
19
3
98 105Right-handed alpha
Helix 20
20
3
144 151Right-handed alpha
Helix 21
21
4
35 39Right-handed 310
Helix 22
22
4
50 55Right-handed alpha
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There are 14 sheets in PDB entry 3JBE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
44 45first strand
Strand 2
3
163 168anti-parallel
Strand 3
3
114 120anti-parallel
Strand 4
3
209 216anti-parallel
Strand 5
3
51 53anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
44 45first strand
Strand 2
3
163 168anti-parallel
Strand 3
3
114 120anti-parallel
Strand 4
3
209 216anti-parallel
Strand 5
3
70 71anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
85 94first strand
Strand 2
1
253 271anti-parallel
Strand 3
1
125 142anti-parallel
Strand 4
1
205 206anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
192 196first strand
Strand 2
1
125 142anti-parallel
Strand 3
1
253 271anti-parallel
Strand 4
3
39 40anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
106 109first strand
Strand 2
1
239 244anti-parallel
Strand 3
1
154 160anti-parallel
Strand 4
1
182 186anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
14 18first strand
Strand 2
2
21 25anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
32 33first strand
Strand 2
2
205 210parallel
Strand 3
2
99 111anti-parallel
Strand 4
2
247 263anti-parallel
Strand 5
2
64 65anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
32 33first strand
Strand 2
2
205 210parallel
Strand 3
2
99 111anti-parallel
Strand 4
2
247 263anti-parallel
Strand 5
2
69 71anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
155 156first strand
Strand 2
2
78 81anti-parallel
Strand 3
2
227 239anti-parallel
Strand 4
2
118 128anti-parallel
Strand 5
2
195 199anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
83 86first strand
Strand 2
3
189 194anti-parallel
Strand 3
3
130 135anti-parallel
Strand 4
3
152 155anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
177 178first strand
Strand 2
3
109 111anti-parallel
Strand 3
3
221 223anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
4 7first strand
Strand 2
4
26 29anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
6 7first strand
Strand 2
7
16 23anti-parallel
Strand 3
7
78 86anti-parallel
Strand 4
7
68 73anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
10 13first strand
Strand 2
7
121 125parallel
Strand 3
7
92 97anti-parallel
Strand 4
7
35 39anti-parallel
Strand 5
7
46 51anti-parallel
Strand 6
7
58 60anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il