Analysis of interatomic Contacts of Structural Units in PDB entry:
3JBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JBF entry

There are 5 chains in PDB entry 3JBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 ALA 20TYR 302
2
 ALA 6GLN 272
3
 GLY 1ALA 235
4
 GLY 2ASN 69
7
 GLN 1HIS 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3JBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
46 50Right-handed 310
Helix 2
2
1
72 75Right-handed 310
Helix 3
3
1
76 81Right-handed alpha
Helix 4
4
1
116 123Right-handed alpha
Helix 5
5
1
172 177Right-handed 310
Helix 6
6
2
35 37Right-handed 310
Helix 7
7
2
56 60Right-handed 310
Helix 8
8
2
84 88Right-handed 310
Helix 9
9
2
89 98Right-handed alpha
Helix 10
10
2
144 149Right-handed alpha
Helix 11
11
2
150 154Right-handed 310
Helix 12
12
2
177 181Right-handed 310
Helix 13
13
2
186 190Right-handed 310
Helix 14
14
3
42 48Right-handed alpha
Helix 15
15
3
64 68Right-handed 310
Helix 16
16
3
98 105Right-handed alpha
Helix 17
17
3
144 149Right-handed alpha
Helix 18
18
4
50 55Right-handed alpha
Helix 19
19
7
28 32Right-handed 310
Helix 20
20
7
84 88Right-handed 310
Helix 21
21
7
104 108Right-handed 310
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There are 17 sheets in PDB entry 3JBF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
44 45first strand
Strand 2
3
163 168anti-parallel
Strand 3
3
114 121anti-parallel
Strand 4
3
207 216anti-parallel
Strand 5
3
51 52anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
44 45first strand
Strand 2
3
163 168anti-parallel
Strand 3
3
114 121anti-parallel
Strand 4
3
207 216anti-parallel
Strand 5
3
72 73anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
85 92first strand
Strand 2
1
253 271anti-parallel
Strand 3
1
125 142anti-parallel
Strand 4
1
192 196anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
106 109first strand
Strand 2
1
239 244anti-parallel
Strand 3
1
154 160anti-parallel
Strand 4
1
182 186anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
14 18first strand
Strand 2
2
21 25anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
32 33first strand
Strand 2
2
208 210parallel
Strand 3
2
99 108anti-parallel
Strand 4
2
256 263anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
64 65first strand
Strand 2
2
252 253anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
69 71first strand
Strand 2
2
247 249anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
155 156first strand
Strand 2
2
78 81anti-parallel
Strand 3
2
227 239anti-parallel
Strand 4
2
118 128anti-parallel
Strand 5
2
195 199anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
83 86first strand
Strand 2
3
189 194anti-parallel
Strand 3
3
128 135anti-parallel
Strand 4
3
152 158anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
177 178first strand
Strand 2
3
107 111anti-parallel
Strand 3
3
221 225anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
6 7first strand
Strand 2
4
26 27anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
4 7first strand
Strand 2
7
18 24anti-parallel
Strand 3
7
75 80anti-parallel
Strand 4
7
65 66anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
4 7first strand
Strand 2
7
18 24anti-parallel
Strand 3
7
75 80anti-parallel
Strand 4
7
69 70anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
11 13first strand
Strand 2
7
118 120parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
56 57first strand
Strand 2
7
43 47anti-parallel
Strand 3
7
35 38anti-parallel
Strand 4
7
93 95anti-parallel
Strand 5
7
110 111anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
90 91first strand
Strand 2
7
115 116anti-parallel
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