Analysis of interatomic Contacts of Structural Units in PDB entry:
3JBH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JBH entry

There are 12 chains in PDB entry 3JBH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 962
B	MET 1	LYS 964
C	MET 1	LYS 156
D	MET 1	LYS 156
E	MET 1	ALA 196
F	MET 1	ALA 196
G	MET 1	ILE 962
H	MET 1	LYS 964
I	MET 1	LYS 156
J	MET 1	LYS 156
K	MET 1	ALA 196
L	MET 1	ALA 196

There are224 helices in PDB entry 3JBH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	7	11	Right-handed 310
Helix 2	2	A	84	88	Right-handed 310
Helix 3	3	A	92	106	Right-handed alpha
Helix 4	4	A	130	138	Right-handed alpha
Helix 5	5	A	141	145	Right-handed 310
Helix 6	6	A	148	164	Right-handed alpha
Helix 7	7	A	179	194	Right-handed alpha
Helix 8	8	A	211	227	Right-handed alpha
Helix 9	9	A	284	289	Right-handed alpha
Helix 10	10	A	291	298	Right-handed alpha
Helix 11	11	A	324	337	Right-handed alpha
Helix 12	12	A	339	357	Right-handed alpha
Helix 13	13	A	378	386	Right-handed alpha
Helix 14	14	A	392	397	Right-handed 310
Helix 15	15	A	413	421	Right-handed alpha
Helix 16	16	A	423	445	Right-handed alpha
Helix 17	17	A	472	492	Right-handed alpha
Helix 18	18	A	492	502	Right-handed alpha
Helix 19	19	A	526	535	Right-handed alpha
Helix 20	20	A	541	552	Right-handed alpha
Helix 21	21	A	590	595	Right-handed alpha
Helix 22	22	A	604	609	Right-handed alpha
Helix 23	23	A	612	619	Right-handed alpha
Helix 24	24	A	648	666	Right-handed alpha
Helix 25	25	A	687	698	Right-handed alpha
Helix 26	26	A	699	710	Right-handed alpha
Helix 27	27	A	718	724	Right-handed alpha
Helix 28	28	A	724	729	Right-handed alpha
Helix 29	29	A	730	732	Right-handed 310
Helix 30	30	A	738	750	Right-handed alpha
Helix 31	31	A	770	784	Right-handed alpha
Helix 32	32	A	786	802	Right-handed alpha
Helix 33	33	A	802	825	Right-handed alpha
Helix 34	34	A	837	841	Right-handed 310
Helix 35	35	A	846	879	Right-handed alpha
Helix 36	36	A	879	960	Right-handed alpha
Helix 37	37	B	20	27	Right-handed 310
Helix 38	38	B	69	71	Right-handed 310
Helix 39	39	B	76	80	Right-handed 310
Helix 40	40	B	92	106	Right-handed alpha
Helix 41	41	B	132	137	Right-handed alpha
Helix 42	42	B	149	164	Right-handed alpha
Helix 43	43	B	178	191	Right-handed alpha
Helix 44	44	B	211	229	Right-handed alpha
Helix 45	45	B	267	271	Right-handed 310
Helix 46	46	B	281	290	Right-handed alpha
Helix 47	47	B	293	299	Right-handed alpha
Helix 48	48	B	323	337	Right-handed alpha
Helix 49	49	B	339	351	Right-handed alpha
Helix 50	50	B	351	356	Right-handed alpha
Helix 51	51	B	357	359	Right-handed 310
Helix 52	52	B	375	386	Right-handed alpha
Helix 53	53	B	388	396	Right-handed alpha
Helix 54	54	B	413	442	Right-handed alpha
Helix 55	55	B	443	445	Right-handed 310
Helix 56	56	B	469	491	Right-handed alpha
Helix 57	57	B	491	502	Right-handed alpha
Helix 58	58	B	521	526	Right-handed alpha
Helix 59	59	B	529	534	Right-handed alpha
Helix 60	60	B	541	553	Right-handed alpha
Helix 61	61	B	590	595	Right-handed alpha
Helix 62	62	B	600	609	Right-handed alpha
Helix 63	63	B	613	618	Right-handed alpha
Helix 64	64	B	648	666	Right-handed alpha
Helix 65	65	B	687	698	Right-handed alpha
Helix 66	66	B	699	707	Right-handed alpha
Helix 67	67	B	717	725	Right-handed alpha
Helix 68	68	B	726	729	Right-handed 310
Helix 69	69	B	742	749	Right-handed alpha
Helix 70	70	B	753	755	Right-handed 310
Helix 71	71	B	770	782	Right-handed alpha
Helix 72	72	B	783	802	Right-handed alpha
Helix 73	73	B	807	820	Right-handed alpha
Helix 74	74	B	821	826	Right-handed alpha
Helix 75	75	B	846	867	Right-handed alpha
Helix 76	76	B	869	963	Right-handed alpha
Helix 77	77	C	5	20	Right-handed alpha
Helix 78	78	C	30	39	Right-handed alpha
Helix 79	79	C	44	52	Right-handed alpha
Helix 80	80	C	64	77	Right-handed alpha
Helix 81	81	C	82	91	Right-handed alpha
Helix 82	82	C	103	113	Right-handed alpha
Helix 83	83	C	118	129	Right-handed alpha
Helix 84	84	C	139	149	Right-handed alpha
Helix 85	85	D	5	20	Right-handed alpha
Helix 86	86	D	31	40	Right-handed alpha
Helix 87	87	D	44	51	Right-handed alpha
Helix 88	88	D	63	75	Right-handed alpha
Helix 89	89	D	83	91	Right-handed alpha
Helix 90	90	D	92	94	Right-handed 310
Helix 91	91	D	103	112	Right-handed alpha
Helix 92	92	D	118	128	Right-handed alpha
Helix 93	93	D	139	149	Right-handed alpha
Helix 94	94	E	7	15	Right-handed 310
Helix 95	95	E	16	22	Right-handed alpha
Helix 96	96	E	33	37	Right-handed 310
Helix 97	97	E	62	67	Right-handed alpha
Helix 98	98	E	75	87	Right-handed alpha
Helix 99	99	E	91	102	Right-handed alpha
Helix 100	100	E	109	117	Right-handed alpha
Helix 101	101	E	124	134	Right-handed alpha
Helix 102	102	E	144	154	Right-handed alpha
Helix 103	103	E	159	169	Right-handed alpha
Helix 104	104	E	178	187	Right-handed alpha
Helix 105	105	F	2	12	Right-handed alpha
Helix 106	106	F	36	41	Right-handed alpha
Helix 107	107	F	57	63	Right-handed alpha
Helix 108	108	F	64	66	Right-handed 310
Helix 109	109	F	82	86	Right-handed 310
Helix 110	110	F	94	99	Right-handed alpha
Helix 111	111	F	111	121	Right-handed alpha
Helix 112	112	F	129	134	Right-handed alpha
Helix 113	113	F	143	154	Right-handed alpha
Helix 114	114	F	159	169	Right-handed alpha
Helix 115	115	F	178	185	Right-handed alpha
Helix 116	116	G	7	11	Right-handed 310
Helix 117	117	G	84	88	Right-handed 310
Helix 118	118	G	93	106	Right-handed alpha
Helix 119	119	G	126	129	Right-handed 310
Helix 120	120	G	130	138	Right-handed alpha
Helix 121	121	G	149	164	Right-handed alpha
Helix 122	122	G	179	195	Right-handed alpha
Helix 123	123	G	211	227	Right-handed alpha
Helix 124	124	G	284	289	Right-handed alpha
Helix 125	125	G	291	298	Right-handed alpha
Helix 126	126	G	323	337	Right-handed alpha
Helix 127	127	G	339	356	Right-handed alpha
Helix 128	128	G	378	386	Right-handed alpha
Helix 129	129	G	392	397	Right-handed 310
Helix 130	130	G	413	421	Right-handed alpha
Helix 131	131	G	423	445	Right-handed alpha
Helix 132	132	G	472	491	Right-handed alpha
Helix 133	133	G	492	502	Right-handed alpha
Helix 134	134	G	514	518	Right-handed 310
Helix 135	135	G	526	535	Right-handed alpha
Helix 136	136	G	541	552	Right-handed alpha
Helix 137	137	G	590	595	Right-handed alpha
Helix 138	138	G	606	610	Right-handed 310
Helix 139	139	G	612	619	Right-handed alpha
Helix 140	140	G	648	666	Right-handed alpha
Helix 141	141	G	687	698	Right-handed alpha
Helix 142	142	G	699	710	Right-handed alpha
Helix 143	143	G	718	725	Right-handed alpha
Helix 144	144	G	738	750	Right-handed alpha
Helix 145	145	G	770	784	Right-handed alpha
Helix 146	146	G	786	802	Right-handed alpha
Helix 147	147	G	802	825	Right-handed alpha
Helix 148	148	G	837	841	Right-handed 310
Helix 149	149	G	846	960	Right-handed alpha
Helix 150	150	H	20	27	Right-handed 310
Helix 151	151	H	69	71	Right-handed 310
Helix 152	152	H	93	105	Right-handed alpha
Helix 153	153	H	132	137	Right-handed alpha
Helix 154	154	H	148	164	Right-handed alpha
Helix 155	155	H	178	191	Right-handed alpha
Helix 156	156	H	211	228	Right-handed alpha
Helix 157	157	H	267	271	Right-handed 310
Helix 158	158	H	281	290	Right-handed alpha
Helix 159	159	H	293	298	Right-handed alpha
Helix 160	160	H	322	335	Right-handed alpha
Helix 161	161	H	339	356	Right-handed alpha
Helix 162	162	H	357	359	Right-handed 310
Helix 163	163	H	375	386	Right-handed alpha
Helix 164	164	H	388	396	Right-handed alpha
Helix 165	165	H	413	444	Right-handed alpha
Helix 166	166	H	469	491	Right-handed alpha
Helix 167	167	H	491	501	Right-handed alpha
Helix 168	168	H	521	526	Right-handed alpha
Helix 169	169	H	541	553	Right-handed alpha
Helix 170	170	H	590	597	Right-handed alpha
Helix 171	171	H	600	609	Right-handed alpha
Helix 172	172	H	613	618	Right-handed alpha
Helix 173	173	H	648	665	Right-handed alpha
Helix 174	174	H	687	698	Right-handed alpha
Helix 175	175	H	701	706	Right-handed alpha
Helix 176	176	H	717	723	Right-handed alpha
Helix 177	177	H	724	729	Right-handed 310
Helix 178	178	H	742	748	Right-handed alpha
Helix 179	179	H	749	751	Right-handed 310
Helix 180	180	H	769	782	Right-handed alpha
Helix 181	181	H	783	802	Right-handed alpha
Helix 182	182	H	807	820	Right-handed alpha
Helix 183	183	H	821	826	Right-handed alpha
Helix 184	184	H	837	841	Right-handed 310
Helix 185	185	H	846	963	Right-handed alpha
Helix 186	186	I	5	20	Right-handed alpha
Helix 187	187	I	31	39	Right-handed alpha
Helix 188	188	I	44	51	Right-handed alpha
Helix 189	189	I	64	75	Right-handed alpha
Helix 190	190	I	82	94	Right-handed alpha
Helix 191	191	I	103	113	Right-handed alpha
Helix 192	192	I	118	129	Right-handed alpha
Helix 193	193	I	139	149	Right-handed alpha
Helix 194	194	J	5	20	Right-handed alpha
Helix 195	195	J	31	39	Right-handed alpha
Helix 196	196	J	44	50	Right-handed alpha
Helix 197	197	J	63	75	Right-handed alpha
Helix 198	198	J	83	92	Right-handed alpha
Helix 199	199	J	103	112	Right-handed alpha
Helix 200	200	J	118	129	Right-handed alpha
Helix 201	201	J	139	149	Right-handed alpha
Helix 202	202	K	7	15	Right-handed 310
Helix 203	203	K	16	21	Right-handed alpha
Helix 204	204	K	33	37	Right-handed 310
Helix 205	205	K	52	57	Right-handed alpha
Helix 206	206	K	62	67	Right-handed alpha
Helix 207	207	K	75	87	Right-handed alpha
Helix 208	208	K	91	102	Right-handed alpha
Helix 209	209	K	107	118	Right-handed alpha
Helix 210	210	K	124	134	Right-handed alpha
Helix 211	211	K	144	152	Right-handed alpha
Helix 212	212	K	159	169	Right-handed alpha
Helix 213	213	K	178	187	Right-handed alpha
Helix 214	214	L	4	12	Right-handed alpha
Helix 215	215	L	57	63	Right-handed alpha
Helix 216	216	L	64	66	Right-handed 310
Helix 217	217	L	78	83	Right-handed alpha
Helix 218	218	L	84	86	Right-handed 310
Helix 219	219	L	94	99	Right-handed alpha
Helix 220	220	L	107	119	Right-handed alpha
Helix 221	221	L	129	134	Right-handed alpha
Helix 222	222	L	143	154	Right-handed alpha
Helix 223	223	L	159	169	Right-handed alpha
Helix 224	224	L	178	185	Right-handed alpha

There are 32 sheets in PDB entry 3JBH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	67	first strand
Strand 2	A	53	58	anti-parallel
Strand 3	A	40	46	anti-parallel
Strand 4	A	31	36	anti-parallel
Strand 5	A	72	73	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	113	first strand
Strand 2	A	116	120	anti-parallel
Strand 3	A	668	675	parallel
Strand 4	A	167	172	parallel
Strand 5	A	456	458	parallel
Strand 6	A	242	249	anti-parallel
Strand 7	A	255	263	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	113	first strand
Strand 2	A	116	120	anti-parallel
Strand 3	A	668	675	parallel
Strand 4	A	167	172	parallel
Strand 5	A	456	458	parallel
Strand 6	A	242	249	anti-parallel
Strand 7	A	453	454	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	403	first strand
Strand 2	A	406	409	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	561	first strand
Strand 2	A	574	578	anti-parallel
Strand 3	A	583	587	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	713	715	first strand
Strand 2	A	764	766	anti-parallel
Strand 3	A	757	759	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	67	first strand
Strand 2	B	53	56	anti-parallel
Strand 3	B	41	50	anti-parallel
Strand 4	B	31	35	anti-parallel
Strand 5	B	72	73	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	117	120	anti-parallel
Strand 3	B	671	675	parallel
Strand 4	B	167	172	parallel
Strand 5	B	452	459	parallel
Strand 6	B	241	249	anti-parallel
Strand 7	B	255	265	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	403	first strand
Strand 2	B	406	409	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	561	first strand
Strand 2	B	576	577	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	713	716	first strand
Strand 2	B	763	766	anti-parallel
Strand 3	B	757	758	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	28	first strand
Strand 2	C	61	63	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	136	138	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	28	first strand
Strand 2	D	61	62	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	136	138	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	143	first strand
Strand 2	E	176	177	anti-parallel
Strand 3	E	172	173	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	67	first strand
Strand 2	G	53	58	anti-parallel
Strand 3	G	40	46	anti-parallel
Strand 4	G	31	36	anti-parallel
Strand 5	G	72	73	anti-parallel

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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	110	113	first strand
Strand 2	G	116	120	anti-parallel
Strand 3	G	670	675	parallel
Strand 4	G	167	172	parallel
Strand 5	G	453	458	parallel
Strand 6	G	243	249	anti-parallel
Strand 7	G	255	261	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	401	403	first strand
Strand 2	G	406	408	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	560	561	first strand
Strand 2	G	574	578	anti-parallel
Strand 3	G	583	587	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	713	715	first strand
Strand 2	G	764	766	anti-parallel
Strand 3	G	757	759	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	64	67	first strand
Strand 2	H	53	56	anti-parallel
Strand 3	H	41	50	anti-parallel
Strand 4	H	31	35	anti-parallel
Strand 5	H	72	73	anti-parallel

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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	117	120	first strand
Strand 2	H	668	675	parallel
Strand 3	H	167	172	parallel
Strand 4	H	452	456	parallel
Strand 5	H	241	249	anti-parallel
Strand 6	H	255	265	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	229	230	first strand
Strand 2	H	238	239	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	400	403	first strand
Strand 2	H	406	409	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	560	561	first strand
Strand 2	H	576	577	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	713	716	first strand
Strand 2	H	763	766	anti-parallel
Strand 3	H	757	758	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	26	28	first strand
Strand 2	I	61	63	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	100	102	first strand
Strand 2	I	136	138	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	27	28	first strand
Strand 2	J	61	62	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	100	102	first strand
Strand 2	J	136	138	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	142	143	first strand
Strand 2	K	176	177	anti-parallel
Strand 3	K	172	173	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JBH

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JBH