Analysis of interatomic Contacts of Structural Units in PDB entry:
3JBI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JBI entry

There are 3 chains in PDB entry 3JBI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5HIS 371
B
 THR 5HIS 371
V
 ASN 917LYS 1047
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 3JBI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 61Right-handed alpha
Helix 2
2
A
78 93Right-handed alpha
Helix 3
3
A
114 128Right-handed alpha
Helix 4
4
A
137 146Right-handed alpha
Helix 5
5
A
172 175Right-handed 310
Helix 6
6
A
182 195Right-handed alpha
Helix 7
7
A
202 216Right-handed alpha
Helix 8
8
A
222 232Right-handed alpha
Helix 9
9
A
251 260Right-handed alpha
Helix 10
10
A
261 262Right-handed 310
Helix 11
11
A
263 267Right-handed 310
Helix 12
12
A
273 283Right-handed alpha
Helix 13
13
A
286 294Right-handed alpha
Helix 14
14
A
301 305Right-handed 310
Helix 15
15
A
310 321Right-handed alpha
Helix 16
16
A
334 336Right-handed 310
Helix 17
17
A
337 349Right-handed alpha
Helix 18
18
A
351 356Right-handed 310
Helix 19
19
A
359 366Right-handed alpha
Helix 20
20
A
367 371Right-handed 310
Helix 21
21
B
56 61Right-handed alpha
Helix 22
22
B
78 93Right-handed alpha
Helix 23
23
B
114 128Right-handed alpha
Helix 24
24
B
137 144Right-handed alpha
Helix 25
25
B
172 175Right-handed 310
Helix 26
26
B
182 194Right-handed alpha
Helix 27
27
B
195 197Right-handed 310
Helix 28
28
B
202 216Right-handed alpha
Helix 29
29
B
222 232Right-handed alpha
Helix 30
30
B
251 260Right-handed alpha
Helix 31
31
B
273 283Right-handed alpha
Helix 32
32
B
286 294Right-handed alpha
Helix 33
33
B
301 305Right-handed 310
Helix 34
34
B
310 321Right-handed alpha
Helix 35
35
B
334 349Right-handed alpha
Helix 36
36
B
351 356Right-handed 310
Helix 37
37
B
359 366Right-handed alpha
Helix 38
38
V
918 939Right-handed alpha
Helix 39
39
V
940 942Right-handed 310
Helix 40
40
V
943 972Right-handed alpha
Helix 41
41
V
974 986Right-handed alpha
Helix 42
42
V
986 1006Right-handed alpha
Helix 43
43
V
1012 1045Right-handed alpha
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There are 13 sheets in PDB entry 3JBI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
17 21anti-parallel
Strand 3
A
8 11anti-parallel
Strand 4
A
103 107parallel
Strand 5
A
131 136parallel
Strand 6
A
357 358anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
35 37anti-parallel
Strand 3
A
66 68anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
159 166anti-parallel
Strand 3
A
176 178anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
159 166anti-parallel
Strand 3
A
150 156anti-parallel
Strand 4
A
297 300parallel
Strand 5
A
329 330parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
247 250anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
17 21anti-parallel
Strand 3
B
8 11anti-parallel
Strand 4
B
103 107parallel
Strand 5
B
134 136parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
35 38anti-parallel
Strand 3
B
65 68anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
75 76anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 132first strand
Strand 2
B
357 358anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
159 166anti-parallel
Strand 3
B
176 178anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
159 166anti-parallel
Strand 3
B
149 156anti-parallel
Strand 4
B
297 300parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 241first strand
Strand 2
B
247 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il