Analysis of interatomic Contacts of Structural Units in PDB entry:
3JBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JBJ entry

There are 2 chains in PDB entry 3JBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5HIS 371
B
 THR 5HIS 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3JBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 60Right-handed 310
Helix 2
2
A
78 93Right-handed alpha
Helix 3
3
A
115 127Right-handed alpha
Helix 4
4
A
137 146Right-handed alpha
Helix 5
5
A
172 175Right-handed 310
Helix 6
6
A
182 194Right-handed alpha
Helix 7
7
A
195 197Right-handed 310
Helix 8
8
A
202 216Right-handed alpha
Helix 9
9
A
222 232Right-handed alpha
Helix 10
10
A
251 260Right-handed alpha
Helix 11
11
A
261 262Right-handed 310
Helix 12
12
A
263 267Right-handed 310
Helix 13
13
A
273 283Right-handed alpha
Helix 14
14
A
286 294Right-handed alpha
Helix 15
15
A
301 305Right-handed 310
Helix 16
16
A
310 321Right-handed alpha
Helix 17
17
A
334 336Right-handed 310
Helix 18
18
A
337 349Right-handed alpha
Helix 19
19
A
351 356Right-handed 310
Helix 20
20
A
359 366Right-handed alpha
Helix 21
21
B
56 61Right-handed alpha
Helix 22
22
B
78 93Right-handed alpha
Helix 23
23
B
116 127Right-handed alpha
Helix 24
24
B
137 146Right-handed alpha
Helix 25
25
B
182 194Right-handed alpha
Helix 26
26
B
195 197Right-handed 310
Helix 27
27
B
202 216Right-handed alpha
Helix 28
28
B
222 232Right-handed alpha
Helix 29
29
B
251 260Right-handed alpha
Helix 30
30
B
273 283Right-handed alpha
Helix 31
31
B
286 294Right-handed alpha
Helix 32
32
B
301 305Right-handed 310
Helix 33
33
B
310 321Right-handed alpha
Helix 34
34
B
334 336Right-handed 310
Helix 35
35
B
337 349Right-handed alpha
Helix 36
36
B
351 356Right-handed 310
Helix 37
37
B
359 366Right-handed alpha
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There are 12 sheets in PDB entry 3JBJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
17 21anti-parallel
Strand 3
A
8 11anti-parallel
Strand 4
A
103 107parallel
Strand 5
A
131 136parallel
Strand 6
A
357 358anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
65 68anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
159 166anti-parallel
Strand 3
A
176 178anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
159 166anti-parallel
Strand 3
A
149 156anti-parallel
Strand 4
A
297 299parallel
Strand 5
A
329 330parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
247 250anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
17 21anti-parallel
Strand 3
B
8 11anti-parallel
Strand 4
B
103 107parallel
Strand 5
B
131 136parallel
Strand 6
B
357 358anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
35 38anti-parallel
Strand 3
B
65 68anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
75 76anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
159 166anti-parallel
Strand 3
B
176 178anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
159 166anti-parallel
Strand 3
B
150 156anti-parallel
Strand 4
B
297 300parallel
Strand 5
B
329 330parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 241first strand
Strand 2
B
247 250anti-parallel
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