Analysis of interatomic Contacts of Structural Units in PDB entry:
3JBK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JBK entry

There are 3 chains in PDB entry 3JBK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5HIS 371
B
 THR 5HIS 371
M
 ASN 917LYS 1047
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3JBK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 61Right-handed alpha
Helix 2
2
A
78 93Right-handed alpha
Helix 3
3
A
114 128Right-handed alpha
Helix 4
4
A
137 145Right-handed alpha
Helix 5
5
A
172 175Right-handed 310
Helix 6
6
A
182 195Right-handed alpha
Helix 7
7
A
205 216Right-handed alpha
Helix 8
8
A
222 232Right-handed alpha
Helix 9
9
A
251 260Right-handed alpha
Helix 10
10
A
273 283Right-handed alpha
Helix 11
11
A
286 294Right-handed alpha
Helix 12
12
A
301 305Right-handed 310
Helix 13
13
A
310 321Right-handed alpha
Helix 14
14
A
334 336Right-handed 310
Helix 15
15
A
337 349Right-handed alpha
Helix 16
16
A
351 356Right-handed 310
Helix 17
17
A
359 366Right-handed alpha
Helix 18
18
A
367 370Right-handed 310
Helix 19
19
B
56 61Right-handed alpha
Helix 20
20
B
78 93Right-handed alpha
Helix 21
21
B
114 127Right-handed alpha
Helix 22
22
B
137 146Right-handed alpha
Helix 23
23
B
172 175Right-handed 310
Helix 24
24
B
182 194Right-handed alpha
Helix 25
25
B
195 197Right-handed 310
Helix 26
26
B
205 216Right-handed alpha
Helix 27
27
B
222 232Right-handed alpha
Helix 28
28
B
251 260Right-handed alpha
Helix 29
29
B
273 283Right-handed alpha
Helix 30
30
B
286 294Right-handed alpha
Helix 31
31
B
301 305Right-handed 310
Helix 32
32
B
310 321Right-handed alpha
Helix 33
33
B
334 336Right-handed 310
Helix 34
34
B
337 349Right-handed alpha
Helix 35
35
B
351 356Right-handed 310
Helix 36
36
B
359 366Right-handed alpha
Helix 37
37
M
918 938Right-handed alpha
Helix 38
38
M
939 942Right-handed 310
Helix 39
39
M
943 972Right-handed alpha
Helix 40
40
M
974 986Right-handed alpha
Helix 41
41
M
986 1006Right-handed alpha
Helix 42
42
M
1012 1045Right-handed alpha
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There are 13 sheets in PDB entry 3JBK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
17 21anti-parallel
Strand 3
A
8 11anti-parallel
Strand 4
A
103 107parallel
Strand 5
A
131 136parallel
Strand 6
A
357 358anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
65 68anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
159 166anti-parallel
Strand 3
A
176 178anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
159 166anti-parallel
Strand 3
A
150 156anti-parallel
Strand 4
A
297 299parallel
Strand 5
A
329 330parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
247 250anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
17 21anti-parallel
Strand 3
B
8 11anti-parallel
Strand 4
B
103 107parallel
Strand 5
B
134 136parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
35 38anti-parallel
Strand 3
B
65 68anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
75 76anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 132first strand
Strand 2
B
357 358anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
159 166anti-parallel
Strand 3
B
176 178anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
159 166anti-parallel
Strand 3
B
150 156anti-parallel
Strand 4
B
298 299parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 241first strand
Strand 2
B
247 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il