Analysis of interatomic Contacts of Structural Units in PDB entry:
3JBQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JBQ entry

There are 12 chains in PDB entry 3JBQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ASP 1	CYS 214
H	GLU 1	ASP 214
B	SER 532	GLN 859
D	GLU 71	ILE 87
C	GLN 387	MET 571
F	SER 532	GLN 859
X	GLU 71	ILE 87
G	GLN 387	MET 571
l	ASP 1	CYS 214
h	GLU 1	ASP 214
1	ARG 55	ARG 225
2	ARG 55	ARG 225

There are 72 helices in PDB entry 3JBQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	L	121	126	Right-handed alpha
Helix 2	2	L	149	153	Right-handed 310
Helix 3	3	L	183	188	Right-handed alpha
Helix 4	4	L	212	214	Right-handed 310
Helix 5	5	H	184	188	Right-handed 310
Helix 6	6	B	533	545	Right-handed alpha
Helix 7	7	B	567	581	Right-handed alpha
Helix 8	8	B	583	589	Right-handed alpha
Helix 9	9	B	591	606	Right-handed alpha
Helix 10	10	B	614	631	Right-handed alpha
Helix 11	11	B	633	637	Right-handed 310
Helix 12	12	B	639	652	Right-handed alpha
Helix 13	13	B	661	669	Right-handed alpha
Helix 14	14	B	670	676	Right-handed alpha
Helix 15	15	B	679	693	Right-handed alpha
Helix 16	16	B	700	704	Right-handed 310
Helix 17	17	B	705	724	Right-handed alpha
Helix 18	18	B	724	740	Right-handed alpha
Helix 19	19	B	748	765	Right-handed alpha
Helix 20	20	B	766	770	Right-handed 310
Helix 21	21	B	771	787	Right-handed alpha
Helix 22	22	B	788	794	Right-handed alpha
Helix 23	23	B	806	810	Right-handed 310
Helix 24	24	B	812	824	Right-handed alpha
Helix 25	25	B	824	835	Right-handed alpha
Helix 26	26	B	839	848	Right-handed alpha
Helix 27	27	B	848	858	Right-handed alpha
Helix 28	28	D	74	82	Right-handed alpha
Helix 29	29	C	391	404	Right-handed alpha
Helix 30	30	C	409	425	Right-handed alpha
Helix 31	31	C	464	473	Right-handed alpha
Helix 32	32	C	531	568	Right-handed alpha
Helix 33	33	F	533	545	Right-handed alpha
Helix 34	34	F	567	581	Right-handed alpha
Helix 35	35	F	584	589	Right-handed alpha
Helix 36	36	F	591	606	Right-handed alpha
Helix 37	37	F	614	630	Right-handed alpha
Helix 38	38	F	633	637	Right-handed 310
Helix 39	39	F	639	652	Right-handed alpha
Helix 40	40	F	661	669	Right-handed alpha
Helix 41	41	F	670	676	Right-handed alpha
Helix 42	42	F	679	693	Right-handed alpha
Helix 43	43	F	705	724	Right-handed alpha
Helix 44	44	F	724	740	Right-handed alpha
Helix 45	45	F	748	765	Right-handed alpha
Helix 46	46	F	766	770	Right-handed 310
Helix 47	47	F	771	793	Right-handed alpha
Helix 48	48	F	806	811	Right-handed 310
Helix 49	49	F	812	835	Right-handed alpha
Helix 50	50	F	839	848	Right-handed alpha
Helix 51	51	F	848	858	Right-handed alpha
Helix 52	52	X	74	83	Right-handed alpha
Helix 53	53	G	390	404	Right-handed alpha
Helix 54	54	G	409	425	Right-handed alpha
Helix 55	55	G	464	473	Right-handed alpha
Helix 56	56	G	531	569	Right-handed alpha
Helix 57	57	l	121	126	Right-handed alpha
Helix 58	58	l	149	153	Right-handed 310
Helix 59	59	l	183	188	Right-handed alpha
Helix 60	60	l	212	214	Right-handed 310
Helix 61	61	h	184	188	Right-handed 310
Helix 62	62	1	56	68	Right-handed alpha
Helix 63	63	1	75	91	Right-handed alpha
Helix 64	64	1	122	127	Right-handed alpha
Helix 65	65	1	140	150	Right-handed alpha
Helix 66	66	1	167	173	Right-handed alpha
Helix 67	67	1	206	224	Right-handed alpha
Helix 68	68	2	56	69	Right-handed alpha
Helix 69	69	2	75	91	Right-handed alpha
Helix 70	70	2	140	150	Right-handed alpha
Helix 71	71	2	166	173	Right-handed alpha
Helix 72	72	2	206	224	Right-handed alpha

There are 28 sheets in PDB entry 3JBQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	65	66	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	42	49	anti-parallel
Strand 3	L	34	39	anti-parallel
Strand 4	L	87	89	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	162	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	147	first strand
Strand 2	L	191	198	anti-parallel
Strand 3	L	201	210	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	23	25	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	20	first strand
Strand 2	H	77	82	anti-parallel
Strand 3	H	68	72	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	32	39	anti-parallel
Strand 4	H	89	96	anti-parallel
Strand 5	H	107	108	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	122	124	first strand
Strand 2	H	137	145	anti-parallel
Strand 3	H	175	182	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	194	199	anti-parallel
Strand 3	H	204	209	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	432	first strand
Strand 2	C	517	521	anti-parallel
Strand 3	C	502	506	anti-parallel
Strand 4	C	476	478	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	442	first strand
Strand 2	C	457	460	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	429	433	first strand
Strand 2	G	517	521	anti-parallel
Strand 3	G	502	506	anti-parallel
Strand 4	G	476	478	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	439	442	first strand
Strand 2	G	457	460	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	19	24	first strand
Strand 2	l	70	75	anti-parallel
Strand 3	l	65	66	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	53	54	first strand
Strand 2	l	42	49	anti-parallel
Strand 3	l	34	39	anti-parallel
Strand 4	l	87	89	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	117	118	first strand
Strand 2	l	129	139	anti-parallel
Strand 3	l	173	182	anti-parallel
Strand 4	l	159	162	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	145	147	first strand
Strand 2	l	191	198	anti-parallel
Strand 3	l	201	210	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	3	5	first strand
Strand 2	h	23	25	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	18	20	first strand
Strand 2	h	77	82	anti-parallel
Strand 3	h	68	72	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	57	59	first strand
Strand 2	h	46	51	anti-parallel
Strand 3	h	32	39	anti-parallel
Strand 4	h	89	96	anti-parallel
Strand 5	h	107	108	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	122	124	first strand
Strand 2	h	137	145	anti-parallel
Strand 3	h	175	182	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	151	154	first strand
Strand 2	h	194	199	anti-parallel
Strand 3	h	204	209	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	135	136	first strand
Strand 2	1	110	117	anti-parallel
Strand 3	1	93	100	anti-parallel
Strand 4	1	189	199	anti-parallel
Strand 5	1	184	186	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	103	104	first strand
Strand 2	1	107	108	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	153	155	first strand
Strand 2	1	179	181	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	135	136	first strand
Strand 2	2	110	117	anti-parallel
Strand 3	2	93	100	anti-parallel
Strand 4	2	189	199	anti-parallel
Strand 5	2	184	186	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	103	104	first strand
Strand 2	2	107	108	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	153	155	first strand
Strand 2	2	179	181	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JBQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JBQ