Analysis of interatomic Contacts of Structural Units in PDB entry:
3JBR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JBR entry

There are 4 chains in PDB entry 3JBR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 32UNK 1520
B
 ARG 41ASN 416
E
 MET 1ARG 206
F
 UNK 40ASP 1064
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are107 helices in PDB entry 3JBR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 49Right-handed alpha
Helix 2
2
A
51 72Right-handed alpha
Helix 3
3
A
82 106Right-handed alpha
Helix 4
4
A
111 114Right-handed 310
Helix 5
5
A
115 139Right-handed alpha
Helix 6
6
A
162 168Right-handed alpha
Helix 7
7
A
169 171Right-handed 310
Helix 8
8
A
172 178Right-handed alpha
Helix 9
9
A
181 194Right-handed alpha
Helix 10
10
A
196 215Right-handed alpha
Helix 11
11
A
216 226Right-handed alpha
Helix 12
12
A
277 290Right-handed alpha
Helix 13
13
A
293 304Right-handed alpha
Helix 14
14
A
309 344Right-handed alpha
Helix 15
15
A
358 372Right-handed alpha
Helix 16
16
A
426 432Right-handed alpha
Helix 17
17
A
437 460Right-handed alpha
Helix 18
18
A
473 497Right-handed alpha
Helix 19
19
A
497 503Right-handed alpha
Helix 20
20
A
503 517Right-handed alpha
Helix 21
21
A
524 535Right-handed alpha
Helix 22
22
A
536 541Right-handed 310
Helix 23
23
A
544 580Right-handed alpha
Helix 24
24
A
599 613Right-handed alpha
Helix 25
25
A
615 627Right-handed alpha
Helix 26
26
A
634 637Right-handed 310
Helix 27
27
A
638 669Right-handed alpha
Helix 28
28
A
799 807Right-handed alpha
Helix 29
29
A
808 829Right-handed alpha
Helix 30
30
A
830 837Right-handed 310
Helix 31
31
A
839 862Right-handed alpha
Helix 32
32
A
866 872Right-handed alpha
Helix 33
33
A
872 885Right-handed alpha
Helix 34
34
A
895 902Right-handed 310
Helix 35
35
A
904 911Right-handed 310
Helix 36
36
A
912 928Right-handed alpha
Helix 37
37
A
928 951Right-handed alpha
Helix 38
38
A
999 1012Right-handed alpha
Helix 39
39
A
1015 1025Right-handed alpha
Helix 40
40
A
1038 1040Right-handed 310
Helix 41
41
A
1041 1076Right-handed alpha
Helix 42
42
A
1105 1117Right-handed alpha
Helix 43
43
A
1118 1137Right-handed alpha
Helix 44
44
A
1145 1170Right-handed alpha
Helix 45
45
A
1181 1202Right-handed alpha
Helix 46
46
A
1203 1204Right-handed 310
Helix 47
47
A
1229 1229Right-handed 310
Helix 48
48
A
1230 1241Right-handed alpha
Helix 49
49
A
1243 1250Right-handed alpha
Helix 50
50
A
1253 1265Right-handed alpha
Helix 51
51
A
1267 1287Right-handed alpha
Helix 52
52
A
1308 1319Right-handed alpha
Helix 53
53
A
1320 1322Right-handed 310
Helix 54
54
A
1324 1333Right-handed alpha
Helix 55
55
A
1357 1383Right-handed alpha
Helix 56
56
A
1383 1395Right-handed alpha
Helix 57
57
A
1400 1411Right-handed alpha
Helix 58
58
A
1416 1423Right-handed alpha
Helix 59
59
A
1423 1434Right-handed alpha
Helix 60
60
A
1440 1454Right-handed alpha
Helix 61
61
A
1459 1475Right-handed alpha
Helix 62
62
A
1479 1484Right-handed 310
Helix 63
63
A
1487 1498Right-handed alpha
Helix 64
64
A
1505 1520Right-handed alpha
Helix 65
65
B
42 57Right-handed alpha
Helix 66
66
B
73 77Right-handed 310
Helix 67
67
B
120 135Right-handed alpha
Helix 68
68
B
239 257Right-handed alpha
Helix 69
69
B
269 273Right-handed 310
Helix 70
70
B
295 310Right-handed alpha
Helix 71
71
B
311 313Right-handed 310
Helix 72
72
B
325 332Right-handed 310
Helix 73
73
B
345 356Right-handed alpha
Helix 74
74
B
364 377Right-handed alpha
Helix 75
75
B
378 383Right-handed alpha
Helix 76
76
B
391 411Right-handed alpha
Helix 77
77
B
412 416Right-handed 310
Helix 78
78
E
6 29Right-handed alpha
Helix 79
79
E
97 128Right-handed alpha
Helix 80
80
E
131 166Right-handed alpha
Helix 81
81
E
180 204Right-handed alpha
Helix 82
82
F
52 54Right-handed 310
Helix 83
83
F
55 68Right-handed alpha
Helix 84
84
F
77 112Right-handed alpha
Helix 85
85
F
178 201Right-handed alpha
Helix 86
86
F
243 249Right-handed alpha
Helix 87
87
F
268 285Right-handed alpha
Helix 88
88
F
314 326Right-handed alpha
Helix 89
89
F
335 348Right-handed alpha
Helix 90
90
F
371 379Right-handed alpha
Helix 91
91
F
398 408Right-handed alpha
Helix 92
92
F
419 429Right-handed alpha
Helix 93
93
F
430 432Right-handed 310
Helix 94
94
F
433 438Right-handed alpha
Helix 95
95
F
485 491Right-handed alpha
Helix 96
96
F
562 567Right-handed alpha
Helix 97
97
F
571 581Right-handed alpha
Helix 98
98
F
639 652Right-handed alpha
Helix 99
99
F
663 677Right-handed alpha
Helix 100
100
F
681 697Right-handed alpha
Helix 101
101
F
732 751Right-handed alpha
Helix 102
102
F
752 765Right-handed alpha
Helix 103
103
F
778 799Right-handed alpha
Helix 104
104
F
859 867Right-handed alpha
Helix 105
105
F
903 912Right-handed alpha
Helix 106
106
F
931 938Right-handed alpha
Helix 107
107
F
978 989Right-handed alpha
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There are 11 sheets in PDB entry 3JBR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
974 975first strand
Strand 2
A
983 984anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
103 108anti-parallel
Strand 3
B
92 97anti-parallel
Strand 4
B
62 66anti-parallel
Strand 5
B
220 223anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 232first strand
Strand 2
B
337 340parallel
Strand 3
B
385 386parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 35first strand
Strand 2
E
177 179anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
44 45first strand
Strand 2
F
49 50anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
166 167first strand
Strand 2
F
216 219anti-parallel
Strand 3
F
207 211anti-parallel
Strand 4
F
479 484anti-parallel
Strand 5
F
461 466anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
300 302first strand
Strand 2
F
291 296anti-parallel
Strand 3
F
255 260parallel
Strand 4
F
358 364parallel
Strand 5
F
384 390parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
500 501first strand
Strand 2
F
620 624anti-parallel
Strand 3
F
609 613anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
594 596first strand
Strand 2
F
603 605anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
806 807first strand
Strand 2
F
818 819anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
827 832first strand
Strand 2
F
839 844anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il