Analysis of interatomic Contacts of Structural Units in PDB entry:
3JBX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JBX entry

There are 3 chains in PDB entry 3JBX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 480	LYS 1029
B	MET 1	GLN 351
C	GLY 480	PRO 841

There are 55 helices in PDB entry 3JBX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	482	492	Right-handed alpha
Helix 2	2	A	496	510	Right-handed alpha
Helix 3	3	A	518	526	Right-handed alpha
Helix 4	4	A	577	588	Right-handed alpha
Helix 5	5	A	589	600	Right-handed alpha
Helix 6	6	A	670	674	Right-handed 310
Helix 7	7	A	686	705	Right-handed alpha
Helix 8	8	A	730	739	Right-handed alpha
Helix 9	9	A	755	762	Right-handed alpha
Helix 10	10	A	771	785	Right-handed alpha
Helix 11	11	A	790	798	Right-handed alpha
Helix 12	12	A	814	835	Right-handed alpha
Helix 13	13	A	844	864	Right-handed alpha
Helix 14	14	A	872	880	Right-handed alpha
Helix 15	15	A	881	889	Right-handed alpha
Helix 16	16	A	894	917	Right-handed alpha
Helix 17	17	A	919	924	Right-handed alpha
Helix 18	18	A	924	930	Right-handed alpha
Helix 19	19	A	930	946	Right-handed alpha
Helix 20	20	A	946	951	Right-handed alpha
Helix 21	21	A	955	962	Right-handed alpha
Helix 22	22	A	964	973	Right-handed alpha
Helix 23	23	A	975	979	Right-handed 310
Helix 24	24	A	980	985	Right-handed alpha
Helix 25	25	A	985	998	Right-handed alpha
Helix 26	26	A	1004	1018	Right-handed alpha
Helix 27	27	A	1018	1023	Right-handed alpha
Helix 28	28	A	1024	1026	Right-handed 310
Helix 29	29	B	308	314	Right-handed alpha
Helix 30	30	C	482	493	Right-handed alpha
Helix 31	31	C	496	510	Right-handed alpha
Helix 32	32	C	518	526	Right-handed alpha
Helix 33	33	C	577	587	Right-handed alpha
Helix 34	34	C	589	600	Right-handed alpha
Helix 35	35	C	670	674	Right-handed 310
Helix 36	36	C	686	705	Right-handed alpha
Helix 37	37	C	730	738	Right-handed alpha
Helix 38	38	C	755	762	Right-handed alpha
Helix 39	39	C	771	784	Right-handed alpha
Helix 40	40	C	790	798	Right-handed alpha
Helix 41	41	C	814	835	Right-handed alpha
Helix 42	42	C	844	862	Right-handed alpha
Helix 43	43	C	872	880	Right-handed alpha
Helix 44	44	C	881	890	Right-handed alpha
Helix 45	45	C	894	912	Right-handed alpha
Helix 46	46	C	919	924	Right-handed alpha
Helix 47	47	C	924	930	Right-handed alpha
Helix 48	48	C	930	946	Right-handed alpha
Helix 49	49	C	946	951	Right-handed alpha
Helix 50	50	C	955	964	Right-handed alpha
Helix 51	51	C	964	973	Right-handed alpha
Helix 52	52	C	980	997	Right-handed alpha
Helix 53	53	C	1005	1018	Right-handed alpha
Helix 54	54	C	1018	1027	Right-handed alpha
Helix 55	55	D	308	314	Right-handed alpha

There are 20 sheets in PDB entry 3JBX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	539	first strand
Strand 2	A	708	713	anti-parallel
Strand 3	A	716	726	anti-parallel
Strand 4	A	611	622	parallel
Strand 5	A	639	651	anti-parallel
Strand 6	A	675	681	anti-parallel
Strand 7	A	572	575	anti-parallel
Strand 8	A	554	555	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	539	first strand
Strand 2	A	708	713	anti-parallel
Strand 3	A	716	726	anti-parallel
Strand 4	A	611	622	parallel
Strand 5	A	639	651	anti-parallel
Strand 6	A	660	664	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	343	349	anti-parallel
Strand 3	B	326	332	anti-parallel
Strand 4	B	318	323	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	23	first strand
Strand 2	B	28	31	anti-parallel
Strand 3	B	45	51	anti-parallel
Strand 4	B	54	59	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	80	first strand
Strand 2	B	89	93	anti-parallel
Strand 3	B	107	114	anti-parallel
Strand 4	B	120	126	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	101	102	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	147	first strand
Strand 2	B	150	156	anti-parallel
Strand 3	B	182	185	anti-parallel
Strand 4	B	192	195	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	175	177	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	212	first strand
Strand 2	B	215	218	anti-parallel
Strand 3	B	233	239	anti-parallel
Strand 4	B	246	252	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	264	first strand
Strand 2	B	271	273	anti-parallel
Strand 3	B	287	292	anti-parallel
Strand 4	B	297	302	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	537	539	first strand
Strand 2	C	708	713	anti-parallel
Strand 3	C	716	720	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	554	555	first strand
Strand 2	C	573	575	anti-parallel
Strand 3	C	675	680	anti-parallel
Strand 4	C	639	651	anti-parallel
Strand 5	C	661	664	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	554	555	first strand
Strand 2	C	573	575	anti-parallel
Strand 3	C	675	680	anti-parallel
Strand 4	C	639	651	anti-parallel
Strand 5	C	611	622	anti-parallel
Strand 6	C	722	726	parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	6	first strand
Strand 2	D	343	349	anti-parallel
Strand 3	D	326	332	anti-parallel
Strand 4	D	318	323	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	23	first strand
Strand 2	D	28	31	anti-parallel
Strand 3	D	46	51	anti-parallel
Strand 4	D	54	59	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	80	first strand
Strand 2	D	89	97	anti-parallel
Strand 3	D	101	113	anti-parallel
Strand 4	D	121	127	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	147	first strand
Strand 2	D	150	156	anti-parallel
Strand 3	D	181	185	anti-parallel
Strand 4	D	192	196	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	175	177	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	212	first strand
Strand 2	D	215	219	anti-parallel
Strand 3	D	233	239	anti-parallel
Strand 4	D	246	252	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	265	first strand
Strand 2	D	271	273	anti-parallel
Strand 3	D	287	292	anti-parallel
Strand 4	D	297	302	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JBX

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JBX