Analysis of interatomic Contacts of Structural Units in PDB entry:
3JBY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JBY entry

There are 3 chains in PDB entry 3JBY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 480	LYS 1029
B	MET 1	GLN 351
C	GLY 480	PRO 841

There are 51 helices in PDB entry 3JBY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	482	492	Right-handed alpha
Helix 2	2	A	496	510	Right-handed alpha
Helix 3	3	A	518	524	Right-handed alpha
Helix 4	4	A	577	588	Right-handed alpha
Helix 5	5	A	589	600	Right-handed alpha
Helix 6	6	A	686	707	Right-handed alpha
Helix 7	7	A	730	738	Right-handed alpha
Helix 8	8	A	755	762	Right-handed alpha
Helix 9	9	A	771	785	Right-handed alpha
Helix 10	10	A	790	799	Right-handed alpha
Helix 11	11	A	814	835	Right-handed alpha
Helix 12	12	A	844	862	Right-handed alpha
Helix 13	13	A	872	880	Right-handed alpha
Helix 14	14	A	881	889	Right-handed alpha
Helix 15	15	A	894	917	Right-handed alpha
Helix 16	16	A	919	924	Right-handed alpha
Helix 17	17	A	924	930	Right-handed alpha
Helix 18	18	A	930	946	Right-handed alpha
Helix 19	19	A	946	951	Right-handed alpha
Helix 20	20	A	955	964	Right-handed alpha
Helix 21	21	A	964	972	Right-handed alpha
Helix 22	22	A	975	979	Right-handed 310
Helix 23	23	A	980	996	Right-handed alpha
Helix 24	24	A	1001	1017	Right-handed alpha
Helix 25	25	A	1018	1024	Right-handed alpha
Helix 26	26	B	308	314	Right-handed alpha
Helix 27	27	C	482	493	Right-handed alpha
Helix 28	28	C	496	510	Right-handed alpha
Helix 29	29	C	518	524	Right-handed alpha
Helix 30	30	C	525	529	Right-handed 310
Helix 31	31	C	577	600	Right-handed alpha
Helix 32	32	C	686	705	Right-handed alpha
Helix 33	33	C	730	738	Right-handed alpha
Helix 34	34	C	757	762	Right-handed alpha
Helix 35	35	C	771	785	Right-handed alpha
Helix 36	36	C	790	798	Right-handed alpha
Helix 37	37	C	814	835	Right-handed alpha
Helix 38	38	C	844	862	Right-handed alpha
Helix 39	39	C	872	880	Right-handed alpha
Helix 40	40	C	881	890	Right-handed alpha
Helix 41	41	C	894	917	Right-handed alpha
Helix 42	42	C	919	924	Right-handed alpha
Helix 43	43	C	924	930	Right-handed alpha
Helix 44	44	C	930	946	Right-handed alpha
Helix 45	45	C	946	951	Right-handed alpha
Helix 46	46	C	955	964	Right-handed alpha
Helix 47	47	C	964	973	Right-handed alpha
Helix 48	48	C	980	993	Right-handed alpha
Helix 49	49	C	1001	1018	Right-handed alpha
Helix 50	50	C	1018	1027	Right-handed alpha
Helix 51	51	D	308	314	Right-handed alpha

There are 19 sheets in PDB entry 3JBY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	539	first strand
Strand 2	A	708	713	anti-parallel
Strand 3	A	716	726	anti-parallel
Strand 4	A	611	622	parallel
Strand 5	A	639	651	anti-parallel
Strand 6	A	675	681	anti-parallel
Strand 7	A	573	576	anti-parallel
Strand 8	A	553	555	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	539	first strand
Strand 2	A	708	713	anti-parallel
Strand 3	A	716	726	anti-parallel
Strand 4	A	611	622	parallel
Strand 5	A	639	651	anti-parallel
Strand 6	A	660	664	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	6	first strand
Strand 2	B	343	349	anti-parallel
Strand 3	B	326	332	anti-parallel
Strand 4	B	318	323	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	23	first strand
Strand 2	B	28	31	anti-parallel
Strand 3	B	46	51	anti-parallel
Strand 4	B	54	59	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	120	126	parallel
Strand 3	B	107	114	anti-parallel
Strand 4	B	89	93	anti-parallel
Strand 5	B	76	80	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	147	first strand
Strand 2	B	150	156	anti-parallel
Strand 3	B	182	186	anti-parallel
Strand 4	B	192	195	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	175	177	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	212	first strand
Strand 2	B	215	218	anti-parallel
Strand 3	B	234	241	anti-parallel
Strand 4	B	244	251	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	265	first strand
Strand 2	B	271	273	anti-parallel
Strand 3	B	288	292	anti-parallel
Strand 4	B	297	301	anti-parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	539	first strand
Strand 2	C	708	713	anti-parallel
Strand 3	C	716	726	anti-parallel
Strand 4	C	611	622	parallel
Strand 5	C	639	651	anti-parallel
Strand 6	C	675	680	anti-parallel
Strand 7	C	573	575	anti-parallel
Strand 8	C	554	555	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	539	first strand
Strand 2	C	708	713	anti-parallel
Strand 3	C	716	726	anti-parallel
Strand 4	C	611	622	parallel
Strand 5	C	639	651	anti-parallel
Strand 6	C	660	664	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	6	first strand
Strand 2	D	343	349	anti-parallel
Strand 3	D	326	332	anti-parallel
Strand 4	D	318	323	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	23	first strand
Strand 2	D	28	31	anti-parallel
Strand 3	D	45	51	anti-parallel
Strand 4	D	54	59	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	80	first strand
Strand 2	D	89	93	anti-parallel
Strand 3	D	106	113	anti-parallel
Strand 4	D	121	127	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	97	first strand
Strand 2	D	101	102	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	147	first strand
Strand 2	D	150	156	anti-parallel
Strand 3	D	181	185	anti-parallel
Strand 4	D	192	196	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	175	177	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	212	first strand
Strand 2	D	215	218	anti-parallel
Strand 3	D	234	238	anti-parallel
Strand 4	D	247	251	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	265	first strand
Strand 2	D	271	273	anti-parallel
Strand 3	D	287	292	anti-parallel
Strand 4	D	297	302	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JBY

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JBY