Analysis of interatomic Contacts of Structural Units in PDB entry:
3JC2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JC2 entry

There are 4 chains in PDB entry 3JC2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 PRO 11SER 466
2
 PHE 7GLY 68
w
 ARG 12SER 30
3
 UNK 21UNK 52
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 3JC2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
27 46Right-handed alpha
Helix 2
2
1
81 97Right-handed alpha
Helix 3
3
1
105 111Right-handed alpha
Helix 4
4
1
112 134Right-handed alpha
Helix 5
5
1
148 173Right-handed alpha
Helix 6
6
1
177 196Right-handed alpha
Helix 7
7
1
217 223Right-handed alpha
Helix 8
8
1
241 259Right-handed alpha
Helix 9
9
1
285 288Right-handed 310
Helix 10
10
1
289 312Right-handed alpha
Helix 11
11
1
339 345Right-handed alpha
Helix 12
12
1
357 383Right-handed alpha
Helix 13
13
1
386 398Right-handed alpha
Helix 14
14
1
405 415Right-handed alpha
Helix 15
15
1
416 439Right-handed alpha
Helix 16
16
1
447 466Right-handed alpha
Helix 17
17
2
8 25Right-handed alpha
Helix 18
18
2
29 57Right-handed alpha
Helix 19
19
2
58 63Right-handed alpha
Helix 20
20
w
13 28Right-handed alpha
Helix 21
21
3
29 48Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3JC2. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
18 19first strand
Strand 2
3
27 28parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
262 268first strand
Strand 2
1
276 282anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il