Analysis of interatomic Contacts of Structural Units in PDB entry:
3JC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JC6 entry

There are 11 chains in PDB entry 3JC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
2
 PRO 201GLU 460
3
 ASP 18HIS 330
4
 LEU 177SER 470
5
 ASP 21SER 340
6
 LEU 97GLY 463
7
 ALA 4LYS 386
E
 ILE 5LEU 650
D
 VAL 54LEU 293
B
 LEU 3LEU 200
A
 MET 1ILE 208
C
 TYR 3LYS 193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 97 helices in PDB entry 3JC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
2
202 216Right-handed alpha
Helix 2
2
2
225 237Right-handed alpha
Helix 3
3
2
245 253Right-handed alpha
Helix 4
4
2
253 261Right-handed alpha
Helix 5
5
2
263 283Right-handed alpha
Helix 6
6
2
310 314Right-handed 310
Helix 7
7
2
393 397Right-handed 310
Helix 8
8
2
413 415Right-handed 310
Helix 9
9
3
19 32Right-handed alpha
Helix 10
10
3
38 55Right-handed alpha
Helix 11
11
3
99 101Right-handed 310
Helix 12
12
3
102 107Right-handed alpha
Helix 13
13
3
107 117Right-handed alpha
Helix 14
14
3
118 120Right-handed 310
Helix 15
15
3
121 135Right-handed alpha
Helix 16
16
3
261 265Right-handed 310
Helix 17
17
3
279 283Right-handed 310
Helix 18
18
4
189 196Right-handed alpha
Helix 19
19
4
226 237Right-handed alpha
Helix 20
20
4
254 264Right-handed alpha
Helix 21
21
4
264 285Right-handed alpha
Helix 22
22
4
294 299Right-handed alpha
Helix 23
23
4
420 424Right-handed 310
Helix 24
24
5
22 37Right-handed alpha
Helix 25
25
5
44 56Right-handed alpha
Helix 26
26
5
64 72Right-handed alpha
Helix 27
27
5
72 80Right-handed alpha
Helix 28
28
5
82 102Right-handed alpha
Helix 29
29
5
147 151Right-handed 310
Helix 30
30
5
279 283Right-handed 310
Helix 31
31
6
106 121Right-handed alpha
Helix 32
32
6
135 144Right-handed alpha
Helix 33
33
6
155 161Right-handed alpha
Helix 34
34
6
164 170Right-handed alpha
Helix 35
35
6
173 176Right-handed 310
Helix 36
36
6
177 193Right-handed alpha
Helix 37
37
7
13 25Right-handed alpha
Helix 38
38
7
61 72Right-handed alpha
Helix 39
39
7
82 92Right-handed alpha
Helix 40
40
7
102 110Right-handed alpha
Helix 41
41
7
111 115Right-handed 310
Helix 42
42
7
119 125Right-handed alpha
Helix 43
43
7
139 158Right-handed alpha
Helix 44
44
7
216 220Right-handed 310
Helix 45
45
7
338 340Right-handed 310
Helix 46
46
E
7 18Right-handed alpha
Helix 47
47
E
35 52Right-handed alpha
Helix 48
48
E
63 74Right-handed alpha
Helix 49
49
E
91 97Right-handed alpha
Helix 50
50
E
130 135Right-handed alpha
Helix 51
51
E
152 157Right-handed alpha
Helix 52
52
E
219 240Right-handed alpha
Helix 53
53
E
250 263Right-handed alpha
Helix 54
54
E
266 278Right-handed alpha
Helix 55
55
E
287 289Right-handed 310
Helix 56
56
E
290 301Right-handed alpha
Helix 57
57
E
333 340Right-handed alpha
Helix 58
58
E
343 348Right-handed alpha
Helix 59
59
E
352 367Right-handed alpha
Helix 60
60
E
369 375Right-handed alpha
Helix 61
61
E
376 380Right-handed 310
Helix 62
62
E
381 387Right-handed alpha
Helix 63
63
E
390 396Right-handed alpha
Helix 64
64
E
397 400Right-handed 310
Helix 65
65
E
421 434Right-handed alpha
Helix 66
66
E
463 483Right-handed alpha
Helix 67
67
E
491 515Right-handed alpha
Helix 68
68
E
537 540Right-handed 310
Helix 69
69
E
541 557Right-handed alpha
Helix 70
70
E
604 614Right-handed alpha
Helix 71
71
E
633 646Right-handed alpha
Helix 72
72
D
55 73Right-handed alpha
Helix 73
73
D
80 105Right-handed alpha
Helix 74
74
D
123 164Right-handed alpha
Helix 75
75
D
178 198Right-handed alpha
Helix 76
76
D
279 288Right-handed alpha
Helix 77
77
B
12 21Right-handed alpha
Helix 78
78
B
73 82Right-handed alpha
Helix 79
79
B
94 107Right-handed alpha
Helix 80
80
B
118 129Right-handed alpha
Helix 81
81
B
130 133Right-handed 310
Helix 82
82
B
140 160Right-handed alpha
Helix 83
83
B
161 163Right-handed 310
Helix 84
84
B
174 199Right-handed alpha
Helix 85
85
A
3 22Right-handed alpha
Helix 86
86
A
34 61Right-handed alpha
Helix 87
87
A
67 104Right-handed alpha
Helix 88
88
A
124 145Right-handed alpha
Helix 89
89
A
193 201Right-handed alpha
Helix 90
90
C
5 12Right-handed alpha
Helix 91
91
C
48 55Right-handed alpha
Helix 92
92
C
77 80Right-handed 310
Helix 93
93
C
81 88Right-handed alpha
Helix 94
94
C
104 116Right-handed alpha
Helix 95
95
C
118 136Right-handed alpha
Helix 96
96
C
164 169Right-handed 310
Helix 97
97
C
170 192Right-handed alpha
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There are 27 sheets in PDB entry 3JC6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
331 333first strand
Strand 2
2
383 391anti-parallel
Strand 3
2
405 411anti-parallel
Strand 4
2
450 452parallel
Strand 5
2
429 431anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
331 333first strand
Strand 2
2
383 391anti-parallel
Strand 3
2
320 325anti-parallel
Strand 4
2
423 426anti-parallel
Strand 5
2
456 458anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
179 180first strand
Strand 2
3
296 300anti-parallel
Strand 3
3
319 321anti-parallel
Strand 4
3
274 277parallel
Strand 5
3
255 259anti-parallel
Strand 6
3
184 186anti-parallel
Strand 7
3
291 293anti-parallel
Strand 8
3
327 328anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
210 213first strand
Strand 2
3
198 203anti-parallel
Strand 3
3
241 243anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
332 335first strand
Strand 2
4
397 400anti-parallel
Strand 3
4
414 417anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
339 342first strand
Strand 2
4
391 394anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
344 345first strand
Strand 2
4
358 359anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
365 366first strand
Strand 2
6
419 420parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
435 436first strand
Strand 2
4
465 466anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
439 442first strand
Strand 2
4
458 461anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
5
60 63first strand
Strand 2
5
136 139parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
5
298 301first strand
Strand 2
5
325 329anti-parallel
Strand 3
5
273 277parallel
Strand 4
5
256 260anti-parallel
Strand 5
5
162 169anti-parallel
Strand 6
5
291 294anti-parallel
Strand 7
5
334 335anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
5
190 193first strand
Strand 2
5
176 183anti-parallel
Strand 3
5
241 250anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
150 154first strand
Strand 2
6
264 268parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
273 274first strand
Strand 2
6
289 290parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
454 456first strand
Strand 2
6
377 381parallel
Strand 3
6
357 362anti-parallel
Strand 4
6
292 295anti-parallel
Strand 5
6
394 397anti-parallel
Strand 6
6
459 460anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
404 405first strand
Strand 2
6
450 451anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
77 81first strand
Strand 2
7
201 205parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
252 253first strand
Strand 2
7
309 316anti-parallel
Strand 3
7
331 336anti-parallel
Strand 4
7
376 377parallel
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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
252 253first strand
Strand 2
7
309 316anti-parallel
Strand 3
7
239 246anti-parallel
Strand 4
7
348 353anti-parallel
Strand 5
7
380 383anti-parallel
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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
269 270first strand
Strand 2
7
259 262anti-parallel
Strand 3
7
298 300anti-parallel
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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
119 123first strand
Strand 2
E
80 84parallel
Strand 3
E
28 31parallel
Strand 4
E
56 60parallel
Strand 5
A
188 192anti-parallel
Strand 6
A
162 166anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
318 321first strand
Strand 2
E
408 414anti-parallel
Strand 3
E
417 420anti-parallel
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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
569 571first strand
Strand 2
E
580 582anti-parallel
Strand 3
E
629 630anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
227 228first strand
Strand 2
D
277 278anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
24 29anti-parallel
Strand 3
B
85 87anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 19first strand
Strand 2
C
43 47anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il