Analysis of interatomic Contacts of Structural Units in PDB entry:
3JCC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JCC entry

There are 6 chains in PDB entry 3JCC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 44	PRO 493
B	THR 8	PRO 209
C	GLN 1	PRO 211
D	LYS 1	VAL 175
E	VAL 44	PRO 493
I	VAL 44	PRO 493

There are 27 helices in PDB entry 3JCC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	73	Right-handed alpha
Helix 2	AA2	A	99	116	Right-handed alpha
Helix 3	AA3	A	335	353	Right-handed alpha
Helix 4	AA4	A	368	373	Right-handed alpha
Helix 5	AA5	A	474	483	Right-handed alpha
Helix 6	AA6	B	79	83	Right-handed 310
Helix 7	AA7	B	122	127	Right-handed alpha
Helix 8	AA8	B	182	189	Right-handed alpha
Helix 9	AA9	C	28	32	Right-handed 310
Helix 10	AB1	C	83	87	Right-handed 310
Helix 11	AB2	C	100	100	Right-handed 310
Helix 12	AB3	C	154	156	Right-handed 310
Helix 13	AB4	C	199	202	Right-handed 310
Helix 14	AB5	D	58	64	Right-handed 310
Helix 15	AB6	D	75	79	Right-handed 310
Helix 16	AB7	D	150	154	Right-handed 310
Helix 17	AB8	E	64	74	Right-handed alpha
Helix 18	AB9	E	98	117	Right-handed alpha
Helix 19	AC1	E	334	353	Right-handed alpha
Helix 20	AC2	E	368	373	Right-handed alpha
Helix 21	AC3	E	387	391	Right-handed 310
Helix 22	AC4	E	474	483	Right-handed alpha
Helix 23	AC5	I	64	74	Right-handed alpha
Helix 24	AC6	I	99	116	Right-handed alpha
Helix 25	AC7	I	334	353	Right-handed alpha
Helix 26	AC8	I	368	373	Right-handed alpha
Helix 27	AC9	I	474	483	Right-handed alpha

There are 35 sheets in PDB entry 3JCC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	487	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	53	55	parallel
Strand 3	A	216	218	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	132	first strand
Strand 2	A	155	162	anti-parallel
Strand 3	A	169	176	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	433	434	parallel
Strand 3	A	423	424	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	443	457	anti-parallel
Strand 3	A	284	298	anti-parallel
Strand 4	A	329	333	anti-parallel
Strand 5	A	414	421	anti-parallel
Strand 6	A	382	385	anti-parallel
Strand 7	A	374	377	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	284	298	anti-parallel
Strand 3	A	443	457	anti-parallel
Strand 4	A	465	470	anti-parallel
Strand 5	A	358	361	parallel
Strand 6	A	394	395	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	307	first strand
Strand 2	A	316	317	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	85	92	anti-parallel
Strand 4	B	31	38	anti-parallel
Strand 5	B	45	48	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	23	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	62	64	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	119	first strand
Strand 2	B	131	138	anti-parallel
Strand 3	B	175	181	anti-parallel
Strand 4	B	160	162	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	146	151	anti-parallel
Strand 3	B	192	198	anti-parallel
Strand 4	B	201	207	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	105	109	parallel
Strand 3	C	88	100	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	58	59	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	105	109	parallel
Strand 3	C	88	100	anti-parallel
Strand 4	C	100	101	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	133	143	anti-parallel
Strand 3	C	174	183	anti-parallel
Strand 4	C	162	163	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	133	143	anti-parallel
Strand 3	C	174	183	anti-parallel
Strand 4	C	167	168	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	152	first strand
Strand 2	C	192	198	anti-parallel
Strand 3	C	203	209	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	7	first strand
Strand 2	D	89	102	parallel
Strand 3	D	80	86	anti-parallel
Strand 4	D	27	30	anti-parallel
Strand 5	D	35	40	anti-parallel
Strand 6	D	43	46	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	7	first strand
Strand 2	D	89	102	parallel
Strand 3	D	114	119	anti-parallel
Strand 4	D	143	146	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	17	first strand
Strand 2	D	66	71	anti-parallel
Strand 3	D	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	140	first strand
Strand 2	D	127	131	anti-parallel
Strand 3	D	155	163	anti-parallel
Strand 4	D	166	174	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	224	228	anti-parallel
Strand 4	E	242	245	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	216	218	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	131	first strand
Strand 2	E	155	162	anti-parallel
Strand 3	E	169	176	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	201	202	first strand
Strand 2	E	433	434	parallel
Strand 3	E	423	424	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	443	457	anti-parallel
Strand 3	E	292	298	anti-parallel
Strand 4	E	329	333	anti-parallel
Strand 5	E	414	421	anti-parallel
Strand 6	E	382	385	anti-parallel
Strand 7	E	374	377	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	274	first strand
Strand 2	E	284	287	anti-parallel
Strand 3	E	443	457	anti-parallel
Strand 4	E	465	470	anti-parallel
Strand 5	E	358	361	parallel
Strand 6	E	394	395	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	305	307	first strand
Strand 2	E	316	318	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	47	first strand
Strand 2	I	487	491	anti-parallel
Strand 3	I	224	228	anti-parallel
Strand 4	I	242	245	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	55	first strand
Strand 2	I	216	218	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	130	131	first strand
Strand 2	I	155	162	anti-parallel
Strand 3	I	169	176	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	201	202	first strand
Strand 2	I	432	434	parallel
Strand 3	I	423	425	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	259	261	first strand
Strand 2	I	443	457	anti-parallel
Strand 3	I	284	298	anti-parallel
Strand 4	I	329	333	anti-parallel
Strand 5	I	414	421	anti-parallel
Strand 6	I	382	385	anti-parallel
Strand 7	I	374	377	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	274	first strand
Strand 2	I	284	298	anti-parallel
Strand 3	I	443	457	anti-parallel
Strand 4	I	465	470	anti-parallel
Strand 5	I	358	361	parallel
Strand 6	I	394	395	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	306	308	first strand
Strand 2	I	315	317	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JCC

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JCC