Analysis of interatomic Contacts of Structural Units in PDB entry:
3JCG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JCG entry

There are 5 chains in PDB entry 3JCG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 19LYS 349
B
 VAL 18LYS 347
C
 TYR 19LYS 348
D
 TYR 19LYS 349
E
 LEU 17LYS 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 3JCG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 55Right-handed 310
Helix 2
2
A
69 80Right-handed alpha
Helix 3
3
A
83 92Right-handed alpha
Helix 4
4
A
147 156Right-handed alpha
Helix 5
5
A
165 200Right-handed alpha
Helix 6
6
A
206 226Right-handed alpha
Helix 7
7
A
227 235Right-handed alpha
Helix 8
8
A
247 299Right-handed alpha
Helix 9
9
A
301 309Right-handed alpha
Helix 10
10
A
330 340Right-handed alpha
Helix 11
11
A
340 345Right-handed alpha
Helix 12
12
B
69 81Right-handed alpha
Helix 13
13
B
83 92Right-handed alpha
Helix 14
14
B
147 157Right-handed alpha
Helix 15
15
B
165 200Right-handed alpha
Helix 16
16
B
206 237Right-handed alpha
Helix 17
17
B
247 301Right-handed alpha
Helix 18
18
B
301 312Right-handed alpha
Helix 19
19
B
325 334Right-handed alpha
Helix 20
20
B
334 345Right-handed alpha
Helix 21
21
C
51 56Right-handed 310
Helix 22
22
C
69 81Right-handed alpha
Helix 23
23
C
83 92Right-handed alpha
Helix 24
24
C
147 157Right-handed alpha
Helix 25
25
C
165 201Right-handed alpha
Helix 26
26
C
206 237Right-handed alpha
Helix 27
27
C
247 299Right-handed alpha
Helix 28
28
C
301 313Right-handed alpha
Helix 29
29
C
326 345Right-handed alpha
Helix 30
30
D
51 55Right-handed 310
Helix 31
31
D
69 80Right-handed alpha
Helix 32
32
D
83 92Right-handed alpha
Helix 33
33
D
147 156Right-handed alpha
Helix 34
34
D
165 201Right-handed alpha
Helix 35
35
D
206 238Right-handed alpha
Helix 36
36
D
248 299Right-handed alpha
Helix 37
37
D
301 313Right-handed alpha
Helix 38
38
D
318 323Right-handed alpha
Helix 39
39
D
327 345Right-handed alpha
Helix 40
40
E
51 55Right-handed 310
Helix 41
41
E
69 81Right-handed alpha
Helix 42
42
E
83 92Right-handed alpha
Helix 43
43
E
147 157Right-handed alpha
Helix 44
44
E
165 202Right-handed alpha
Helix 45
45
E
206 237Right-handed alpha
Helix 46
46
E
246 299Right-handed alpha
Helix 47
47
E
301 313Right-handed alpha
Helix 48
48
E
318 323Right-handed alpha
Helix 49
49
E
329 341Right-handed alpha
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There are 7 sheets in PDB entry 3JCG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
28 34anti-parallel
Strand 3
A
60 65anti-parallel
Strand 4
A
135 140parallel
Strand 5
A
121 132anti-parallel
Strand 6
A
106 116anti-parallel
Strand 7
A
99 101anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 42first strand
Strand 2
B
28 34anti-parallel
Strand 3
B
60 65anti-parallel
Strand 4
B
135 140parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
105 116anti-parallel
Strand 3
B
121 132anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 43first strand
Strand 2
C
28 34anti-parallel
Strand 3
C
60 65anti-parallel
Strand 4
C
135 140parallel
Strand 5
C
121 132anti-parallel
Strand 6
C
107 116anti-parallel
Strand 7
C
99 100anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 42first strand
Strand 2
D
28 34anti-parallel
Strand 3
D
60 65anti-parallel
Strand 4
D
135 140parallel
Strand 5
D
122 132anti-parallel
Strand 6
D
106 115anti-parallel
Strand 7
D
99 101anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 42first strand
Strand 2
E
28 34anti-parallel
Strand 3
E
60 65anti-parallel
Strand 4
E
135 139parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
99 101first strand
Strand 2
E
106 115anti-parallel
Strand 3
E
122 131anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il