Analysis of interatomic Contacts of Structural Units in PDB entry:
3JCK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JCK entry

There are 9 chains in PDB entry 3JCK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 UNK 27PRO 482
B
 ASP 31HIS 440
C
 GLN 54SER 431
D
 VAL 21THR 424
E
 LEU 3LYS 307
F
 GLU 6VAL 393
G
 LYS 24LYS 306
H
 LEU 7ASN 272
I
 GLU 31ASN 88
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are145 helices in PDB entry 3JCK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 37Right-handed alpha
Helix 2
2
A
43 55Right-handed alpha
Helix 3
3
A
60 71Right-handed alpha
Helix 4
4
A
132 150Right-handed alpha
Helix 5
5
A
152 162Right-handed alpha
Helix 6
6
A
162 173Right-handed alpha
Helix 7
7
A
174 196Right-handed alpha
Helix 8
8
A
200 225Right-handed alpha
Helix 9
9
A
226 244Right-handed alpha
Helix 10
10
A
247 256Right-handed alpha
Helix 11
11
A
265 283Right-handed alpha
Helix 12
12
A
288 299Right-handed alpha
Helix 13
13
A
306 324Right-handed alpha
Helix 14
14
A
329 334Right-handed alpha
Helix 15
15
A
336 341Right-handed 310
Helix 16
16
A
342 355Right-handed alpha
Helix 17
17
A
356 373Right-handed alpha
Helix 18
18
A
375 381Right-handed alpha
Helix 19
19
A
383 398Right-handed alpha
Helix 20
20
A
404 411Right-handed alpha
Helix 21
21
A
415 429Right-handed alpha
Helix 22
22
A
455 478Right-handed alpha
Helix 23
23
B
32 36Right-handed alpha
Helix 24
24
B
36 42Right-handed alpha
Helix 25
25
B
43 45Right-handed 310
Helix 26
26
B
48 69Right-handed alpha
Helix 27
27
B
71 85Right-handed alpha
Helix 28
28
B
94 107Right-handed alpha
Helix 29
29
B
110 126Right-handed alpha
Helix 30
30
B
134 148Right-handed alpha
Helix 31
31
B
152 161Right-handed alpha
Helix 32
32
B
164 168Right-handed 310
Helix 33
33
B
172 191Right-handed alpha
Helix 34
34
B
193 202Right-handed alpha
Helix 35
35
B
204 209Right-handed 310
Helix 36
36
B
210 232Right-handed alpha
Helix 37
37
B
234 246Right-handed alpha
Helix 38
38
B
247 253Right-handed alpha
Helix 39
39
B
253 271Right-handed alpha
Helix 40
40
B
274 287Right-handed alpha
Helix 41
41
B
288 292Right-handed 310
Helix 42
42
B
294 305Right-handed alpha
Helix 43
43
B
310 325Right-handed alpha
Helix 44
44
B
336 356Right-handed alpha
Helix 45
45
B
362 370Right-handed alpha
Helix 46
46
B
372 386Right-handed alpha
Helix 47
47
B
407 440Right-handed alpha
Helix 48
48
C
54 57Right-handed 310
Helix 49
49
C
58 65Right-handed alpha
Helix 50
50
C
70 84Right-handed alpha
Helix 51
51
C
93 106Right-handed alpha
Helix 52
52
C
111 128Right-handed alpha
Helix 53
53
C
130 145Right-handed alpha
Helix 54
54
C
151 169Right-handed alpha
Helix 55
55
C
170 188Right-handed alpha
Helix 56
56
C
191 208Right-handed alpha
Helix 57
57
C
211 229Right-handed alpha
Helix 58
58
C
231 249Right-handed alpha
Helix 59
59
C
253 273Right-handed alpha
Helix 60
60
C
275 282Right-handed alpha
Helix 61
61
C
287 292Right-handed alpha
Helix 62
62
C
293 309Right-handed alpha
Helix 63
63
C
310 317Right-handed alpha
Helix 64
64
C
321 326Right-handed alpha
Helix 65
65
C
328 352Right-handed alpha
Helix 66
66
C
358 367Right-handed alpha
Helix 67
67
C
369 383Right-handed alpha
Helix 68
68
C
406 429Right-handed alpha
Helix 69
69
D
24 35Right-handed alpha
Helix 70
70
D
39 56Right-handed alpha
Helix 71
71
D
59 72Right-handed alpha
Helix 72
72
D
95 123Right-handed alpha
Helix 73
73
D
126 144Right-handed alpha
Helix 74
74
D
146 158Right-handed alpha
Helix 75
75
D
163 168Right-handed alpha
Helix 76
76
D
168 182Right-handed alpha
Helix 77
77
D
183 201Right-handed alpha
Helix 78
78
D
203 221Right-handed alpha
Helix 79
79
D
223 235Right-handed alpha
Helix 80
80
D
245 261Right-handed alpha
Helix 81
81
D
262 270Right-handed alpha
Helix 82
82
D
275 280Right-handed alpha
Helix 83
83
D
281 283Right-handed 310
Helix 84
84
D
285 298Right-handed alpha
Helix 85
85
D
300 315Right-handed alpha
Helix 86
86
D
322 324Right-handed 310
Helix 87
87
D
325 343Right-handed alpha
Helix 88
88
D
350 358Right-handed alpha
Helix 89
89
D
360 372Right-handed alpha
Helix 90
90
D
373 375Right-handed 310
Helix 91
91
D
395 424Right-handed alpha
Helix 92
92
E
11 26Right-handed alpha
Helix 93
93
E
69 82Right-handed alpha
Helix 94
94
E
102 111Right-handed alpha
Helix 95
95
E
164 176Right-handed alpha
Helix 96
96
E
185 216Right-handed alpha
Helix 97
97
E
222 235Right-handed alpha
Helix 98
98
E
260 307Right-handed alpha
Helix 99
99
F
7 17Right-handed alpha
Helix 100
100
F
19 22Right-handed 310
Helix 101
101
F
23 36Right-handed alpha
Helix 102
102
F
37 52Right-handed alpha
Helix 103
103
F
53 56Right-handed 310
Helix 104
104
F
57 64Right-handed alpha
Helix 105
105
F
64 69Right-handed alpha
Helix 106
106
F
70 72Right-handed 310
Helix 107
107
F
74 89Right-handed alpha
Helix 108
108
F
91 113Right-handed alpha
Helix 109
109
F
121 141Right-handed alpha
Helix 110
110
F
142 160Right-handed alpha
Helix 111
111
F
164 183Right-handed alpha
Helix 112
112
F
184 199Right-handed alpha
Helix 113
113
F
206 224Right-handed alpha
Helix 114
114
F
230 235Right-handed alpha
Helix 115
115
F
238 243Right-handed alpha
Helix 116
116
F
245 247Right-handed 310
Helix 117
117
F
248 260Right-handed alpha
Helix 118
118
F
262 277Right-handed alpha
Helix 119
119
F
277 282Right-handed alpha
Helix 120
120
F
283 303Right-handed alpha
Helix 121
121
F
310 318Right-handed alpha
Helix 122
122
F
323 334Right-handed alpha
Helix 123
123
F
359 385Right-handed alpha
Helix 124
124
G
30 45Right-handed alpha
Helix 125
125
G
84 97Right-handed alpha
Helix 126
126
G
119 129Right-handed alpha
Helix 127
127
G
186 191Right-handed 310
Helix 128
128
G
206 215Right-handed alpha
Helix 129
129
G
229 261Right-handed alpha
Helix 130
130
G
262 271Right-handed alpha
Helix 131
131
G
275 306Right-handed alpha
Helix 132
132
H
8 18Right-handed alpha
Helix 133
133
H
19 41Right-handed alpha
Helix 134
134
H
51 72Right-handed alpha
Helix 135
135
H
74 91Right-handed alpha
Helix 136
136
H
100 116Right-handed alpha
Helix 137
137
H
118 134Right-handed alpha
Helix 138
138
H
142 155Right-handed alpha
Helix 139
139
H
156 167Right-handed alpha
Helix 140
140
H
173 197Right-handed alpha
Helix 141
141
H
202 210Right-handed alpha
Helix 142
142
H
214 224Right-handed alpha
Helix 143
143
H
258 272Right-handed alpha
Helix 144
144
I
63 69Right-handed alpha
Helix 145
145
I
71 86Right-handed alpha
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There are 9 sheets in PDB entry 3JCK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 403first strand
Strand 2
A
442 445anti-parallel
Strand 3
A
434 437anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
354 355first strand
Strand 2
B
392 394parallel
Strand 3
B
399 401anti-parallel
Strand 4
B
357 361anti-parallel
Strand 5
F
341 342parallel
Strand 6
F
347 348anti-parallel
Strand 7
F
308 309anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
396 399first strand
Strand 2
C
388 391anti-parallel
Strand 3
D
345 349parallel
Strand 4
D
387 390anti-parallel
Strand 5
D
379 382anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 10first strand
Strand 2
E
46 53parallel
Strand 3
E
34 40anti-parallel
Strand 4
E
88 94anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
56 58first strand
Strand 2
E
66 68anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
120 123first strand
Strand 2
E
134 140anti-parallel
Strand 3
E
153 157anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
337 338first strand
Strand 2
F
352 353anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
196 198first strand
Strand 2
G
153 158anti-parallel
Strand 3
G
137 141anti-parallel
Strand 4
G
103 108parallel
Strand 5
G
50 56anti-parallel
Strand 6
G
62 71anti-parallel
Strand 7
G
26 29parallel
Strand 8
G
201 202parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
199 201first strand
Strand 2
H
232 234anti-parallel
Strand 3
H
228 229anti-parallel
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