Analysis of interatomic Contacts of Structural Units in PDB entry:
3JCL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JCL entry

There are 3 chains in PDB entry 3JCL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 15	VAL 1118
B	TYR 15	VAL 1118
C	TYR 15	VAL 1118

There are 99 helices in PDB entry 3JCL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	43	47	Right-handed 310
Helix 2	2	A	90	92	Right-handed 310
Helix 3	3	A	111	114	Right-handed 310
Helix 4	4	A	250	254	Right-handed 310
Helix 5	5	A	287	297	Right-handed alpha
Helix 6	6	A	330	336	Right-handed alpha
Helix 7	7	A	357	362	Right-handed alpha
Helix 8	8	A	376	381	Right-handed alpha
Helix 9	9	A	396	398	Right-handed 310
Helix 10	10	A	399	404	Right-handed alpha
Helix 11	11	A	466	471	Right-handed alpha
Helix 12	12	A	479	483	Right-handed 310
Helix 13	13	A	520	524	Right-handed 310
Helix 14	14	A	598	602	Right-handed 310
Helix 15	15	A	657	664	Right-handed alpha
Helix 16	16	A	717	728	Right-handed alpha
Helix 17	17	A	734	751	Right-handed alpha
Helix 18	18	A	752	755	Right-handed 310
Helix 19	19	A	774	780	Right-handed alpha
Helix 20	20	A	783	791	Right-handed alpha
Helix 21	21	A	793	824	Right-handed alpha
Helix 22	22	A	865	879	Right-handed alpha
Helix 23	23	A	883	894	Right-handed alpha
Helix 24	24	A	895	897	Right-handed 310
Helix 25	25	A	902	910	Right-handed alpha
Helix 26	26	A	920	937	Right-handed alpha
Helix 27	27	A	938	945	Right-handed alpha
Helix 28	28	A	947	958	Right-handed alpha
Helix 29	29	A	968	988	Right-handed alpha
Helix 30	30	A	992	1016	Right-handed alpha
Helix 31	31	A	1017	1019	Right-handed 310
Helix 32	32	A	1026	1032	Right-handed alpha
Helix 33	33	A	1035	1083	Right-handed alpha
Helix 34	34	B	43	47	Right-handed 310
Helix 35	35	B	90	92	Right-handed 310
Helix 36	36	B	111	114	Right-handed 310
Helix 37	37	B	250	254	Right-handed 310
Helix 38	38	B	287	297	Right-handed alpha
Helix 39	39	B	330	336	Right-handed alpha
Helix 40	40	B	357	362	Right-handed alpha
Helix 41	41	B	376	381	Right-handed alpha
Helix 42	42	B	396	398	Right-handed 310
Helix 43	43	B	399	404	Right-handed alpha
Helix 44	44	B	466	471	Right-handed alpha
Helix 45	45	B	479	483	Right-handed 310
Helix 46	46	B	520	524	Right-handed 310
Helix 47	47	B	598	602	Right-handed 310
Helix 48	48	B	657	664	Right-handed alpha
Helix 49	49	B	717	728	Right-handed alpha
Helix 50	50	B	734	751	Right-handed alpha
Helix 51	51	B	752	755	Right-handed 310
Helix 52	52	B	774	780	Right-handed alpha
Helix 53	53	B	783	791	Right-handed alpha
Helix 54	54	B	793	824	Right-handed alpha
Helix 55	55	B	865	879	Right-handed alpha
Helix 56	56	B	883	894	Right-handed alpha
Helix 57	57	B	895	897	Right-handed 310
Helix 58	58	B	902	910	Right-handed alpha
Helix 59	59	B	920	937	Right-handed alpha
Helix 60	60	B	938	945	Right-handed alpha
Helix 61	61	B	947	958	Right-handed alpha
Helix 62	62	B	968	988	Right-handed alpha
Helix 63	63	B	992	1016	Right-handed alpha
Helix 64	64	B	1017	1019	Right-handed 310
Helix 65	65	B	1026	1032	Right-handed alpha
Helix 66	66	B	1035	1083	Right-handed alpha
Helix 67	67	C	43	47	Right-handed 310
Helix 68	68	C	90	92	Right-handed 310
Helix 69	69	C	111	114	Right-handed 310
Helix 70	70	C	250	254	Right-handed 310
Helix 71	71	C	287	297	Right-handed alpha
Helix 72	72	C	330	336	Right-handed alpha
Helix 73	73	C	357	362	Right-handed alpha
Helix 74	74	C	376	381	Right-handed alpha
Helix 75	75	C	396	398	Right-handed 310
Helix 76	76	C	399	404	Right-handed alpha
Helix 77	77	C	466	471	Right-handed alpha
Helix 78	78	C	479	483	Right-handed 310
Helix 79	79	C	520	524	Right-handed 310
Helix 80	80	C	598	602	Right-handed 310
Helix 81	81	C	657	664	Right-handed alpha
Helix 82	82	C	717	728	Right-handed alpha
Helix 83	83	C	734	751	Right-handed alpha
Helix 84	84	C	752	755	Right-handed 310
Helix 85	85	C	774	780	Right-handed alpha
Helix 86	86	C	783	791	Right-handed alpha
Helix 87	87	C	793	824	Right-handed alpha
Helix 88	88	C	865	879	Right-handed alpha
Helix 89	89	C	883	894	Right-handed alpha
Helix 90	90	C	895	897	Right-handed 310
Helix 91	91	C	902	910	Right-handed alpha
Helix 92	92	C	920	937	Right-handed alpha
Helix 93	93	C	938	945	Right-handed alpha
Helix 94	94	C	947	958	Right-handed alpha
Helix 95	95	C	968	988	Right-handed alpha
Helix 96	96	C	992	1016	Right-handed alpha
Helix 97	97	C	1017	1019	Right-handed 310
Helix 98	98	C	1026	1032	Right-handed alpha
Helix 99	99	C	1035	1083	Right-handed alpha

There are 39 sheets in PDB entry 3JCL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	86	88	parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	41	first strand
Strand 2	A	75	78	anti-parallel
Strand 3	A	258	272	anti-parallel
Strand 4	A	103	109	anti-parallel
Strand 5	A	201	209	anti-parallel
Strand 6	A	212	218	anti-parallel
Strand 7	A	225	231	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	70	first strand
Strand 2	A	258	272	anti-parallel
Strand 3	A	278	283	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	244	245	parallel
Strand 3	A	163	164	parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	238	242	anti-parallel
Strand 3	A	125	129	anti-parallel
Strand 4	A	138	144	anti-parallel
Strand 5	A	147	154	anti-parallel
Strand 6	A	186	194	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	307	first strand
Strand 2	A	638	642	anti-parallel
Strand 3	A	650	654	anti-parallel
Strand 4	A	681	684	anti-parallel
Strand 5	A	675	678	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	321	first strand
Strand 2	A	580	585	parallel
Strand 3	A	588	597	anti-parallel
Strand 4	A	627	631	anti-parallel
Strand 5	A	616	620	anti-parallel
Strand 6	A	608	610	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	387	394	anti-parallel
Strand 3	A	549	556	anti-parallel
Strand 4	A	424	430	anti-parallel
Strand 5	A	366	373	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	563	565	parallel
Strand 3	A	384	385	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	455	first strand
Strand 2	A	533	543	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	688	694	first strand
Strand 2	A	710	714	parallel
Strand 3	A	705	707	anti-parallel
Strand 4	A	699	700	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	757	764	first strand
Strand 2	A	1109	1117	anti-parallel
Strand 3	A	1100	1106	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	770	773	first strand
Strand 2	A	912	915	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	28	first strand
Strand 2	B	86	88	parallel

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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	41	first strand
Strand 2	B	75	78	anti-parallel
Strand 3	B	258	272	anti-parallel
Strand 4	B	103	109	anti-parallel
Strand 5	B	201	209	anti-parallel
Strand 6	B	212	218	anti-parallel
Strand 7	B	225	231	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	70	first strand
Strand 2	B	258	272	anti-parallel
Strand 3	B	278	283	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	244	245	parallel
Strand 3	B	163	164	parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	238	242	anti-parallel
Strand 3	B	125	129	anti-parallel
Strand 4	B	138	144	anti-parallel
Strand 5	B	147	154	anti-parallel
Strand 6	B	186	194	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	307	first strand
Strand 2	B	638	642	anti-parallel
Strand 3	B	650	654	anti-parallel
Strand 4	B	681	684	anti-parallel
Strand 5	B	675	678	anti-parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	321	first strand
Strand 2	B	580	585	parallel
Strand 3	B	588	597	anti-parallel
Strand 4	B	627	631	anti-parallel
Strand 5	B	616	620	anti-parallel
Strand 6	B	608	610	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	387	394	anti-parallel
Strand 3	B	549	556	anti-parallel
Strand 4	B	424	430	anti-parallel
Strand 5	B	366	373	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	356	first strand
Strand 2	B	563	565	parallel
Strand 3	B	384	385	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	455	first strand
Strand 2	B	533	543	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	688	694	first strand
Strand 2	B	710	714	parallel
Strand 3	B	705	707	anti-parallel
Strand 4	B	699	700	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	757	764	first strand
Strand 2	B	1109	1117	anti-parallel
Strand 3	B	1100	1106	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	770	773	first strand
Strand 2	B	912	915	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	28	first strand
Strand 2	C	86	88	parallel

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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	41	first strand
Strand 2	C	75	78	anti-parallel
Strand 3	C	258	272	anti-parallel
Strand 4	C	103	109	anti-parallel
Strand 5	C	201	209	anti-parallel
Strand 6	C	212	218	anti-parallel
Strand 7	C	225	231	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	70	first strand
Strand 2	C	258	272	anti-parallel
Strand 3	C	278	283	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	244	245	parallel
Strand 3	C	163	164	parallel

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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	238	242	anti-parallel
Strand 3	C	125	129	anti-parallel
Strand 4	C	138	144	anti-parallel
Strand 5	C	147	154	anti-parallel
Strand 6	C	186	194	anti-parallel

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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	307	first strand
Strand 2	C	638	642	anti-parallel
Strand 3	C	650	654	anti-parallel
Strand 4	C	681	684	anti-parallel
Strand 5	C	675	678	anti-parallel

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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	321	first strand
Strand 2	C	580	585	parallel
Strand 3	C	588	597	anti-parallel
Strand 4	C	627	631	anti-parallel
Strand 5	C	616	620	anti-parallel
Strand 6	C	608	610	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	351	first strand
Strand 2	C	387	394	anti-parallel
Strand 3	C	549	556	anti-parallel
Strand 4	C	424	430	anti-parallel
Strand 5	C	366	373	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	356	first strand
Strand 2	C	563	565	parallel
Strand 3	C	384	385	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	455	first strand
Strand 2	C	533	543	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	688	694	first strand
Strand 2	C	710	714	parallel
Strand 3	C	705	707	anti-parallel
Strand 4	C	699	700	anti-parallel

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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	764	first strand
Strand 2	C	1109	1117	anti-parallel
Strand 3	C	1100	1106	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	770	773	first strand
Strand 2	C	912	915	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JCL

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JCL