Analysis of interatomic Contacts of Structural Units in PDB entry:
3JD2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JD2 entry

There are 6 chains in PDB entry 3JD2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 6	THR 501
B	ASP 6	THR 501
C	ASP 6	THR 501
D	ASP 6	THR 501
E	ASP 6	THR 501
F	ASP 6	THR 501

There are132 helices in PDB entry 3JD2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	30	Right-handed alpha
Helix 2	2	A	37	52	Right-handed alpha
Helix 3	3	A	101	118	Right-handed alpha
Helix 4	4	A	132	136	Right-handed 310
Helix 5	5	A	137	154	Right-handed alpha
Helix 6	6	A	173	187	Right-handed alpha
Helix 7	7	A	193	197	Right-handed 310
Helix 8	8	A	202	206	Right-handed 310
Helix 9	9	A	213	228	Right-handed alpha
Helix 10	10	A	229	237	Right-handed alpha
Helix 11	11	A	253	265	Right-handed alpha
Helix 12	12	A	287	297	Right-handed alpha
Helix 13	13	A	353	362	Right-handed alpha
Helix 14	14	A	369	374	Right-handed alpha
Helix 15	15	A	376	391	Right-handed alpha
Helix 16	16	A	398	418	Right-handed alpha
Helix 17	17	A	419	420	Right-handed 310
Helix 18	18	A	421	425	Right-handed 310
Helix 19	19	A	433	441	Right-handed alpha
Helix 20	20	A	444	460	Right-handed alpha
Helix 21	21	A	460	471	Right-handed alpha
Helix 22	22	A	476	495	Right-handed alpha
Helix 23	23	B	8	30	Right-handed alpha
Helix 24	24	B	37	52	Right-handed alpha
Helix 25	25	B	101	118	Right-handed alpha
Helix 26	26	B	132	136	Right-handed 310
Helix 27	27	B	137	154	Right-handed alpha
Helix 28	28	B	173	187	Right-handed alpha
Helix 29	29	B	193	197	Right-handed 310
Helix 30	30	B	202	206	Right-handed 310
Helix 31	31	B	213	228	Right-handed alpha
Helix 32	32	B	229	237	Right-handed alpha
Helix 33	33	B	253	265	Right-handed alpha
Helix 34	34	B	287	297	Right-handed alpha
Helix 35	35	B	353	362	Right-handed alpha
Helix 36	36	B	369	374	Right-handed alpha
Helix 37	37	B	376	391	Right-handed alpha
Helix 38	38	B	398	418	Right-handed alpha
Helix 39	39	B	419	420	Right-handed 310
Helix 40	40	B	421	425	Right-handed 310
Helix 41	41	B	433	441	Right-handed alpha
Helix 42	42	B	444	460	Right-handed alpha
Helix 43	43	B	460	471	Right-handed alpha
Helix 44	44	B	476	495	Right-handed alpha
Helix 45	45	C	8	30	Right-handed alpha
Helix 46	46	C	37	52	Right-handed alpha
Helix 47	47	C	101	118	Right-handed alpha
Helix 48	48	C	132	136	Right-handed 310
Helix 49	49	C	137	154	Right-handed alpha
Helix 50	50	C	173	187	Right-handed alpha
Helix 51	51	C	193	197	Right-handed 310
Helix 52	52	C	202	206	Right-handed 310
Helix 53	53	C	213	228	Right-handed alpha
Helix 54	54	C	229	237	Right-handed alpha
Helix 55	55	C	253	265	Right-handed alpha
Helix 56	56	C	287	297	Right-handed alpha
Helix 57	57	C	353	362	Right-handed alpha
Helix 58	58	C	369	374	Right-handed alpha
Helix 59	59	C	376	391	Right-handed alpha
Helix 60	60	C	398	418	Right-handed alpha
Helix 61	61	C	419	420	Right-handed 310
Helix 62	62	C	421	425	Right-handed 310
Helix 63	63	C	433	441	Right-handed alpha
Helix 64	64	C	444	460	Right-handed alpha
Helix 65	65	C	460	471	Right-handed alpha
Helix 66	66	C	476	495	Right-handed alpha
Helix 67	67	D	8	30	Right-handed alpha
Helix 68	68	D	37	52	Right-handed alpha
Helix 69	69	D	101	118	Right-handed alpha
Helix 70	70	D	132	136	Right-handed 310
Helix 71	71	D	137	154	Right-handed alpha
Helix 72	72	D	173	187	Right-handed alpha
Helix 73	73	D	193	197	Right-handed 310
Helix 74	74	D	202	206	Right-handed 310
Helix 75	75	D	213	228	Right-handed alpha
Helix 76	76	D	229	237	Right-handed alpha
Helix 77	77	D	253	265	Right-handed alpha
Helix 78	78	D	287	297	Right-handed alpha
Helix 79	79	D	353	362	Right-handed alpha
Helix 80	80	D	369	374	Right-handed alpha
Helix 81	81	D	376	391	Right-handed alpha
Helix 82	82	D	398	418	Right-handed alpha
Helix 83	83	D	419	420	Right-handed 310
Helix 84	84	D	421	425	Right-handed 310
Helix 85	85	D	433	441	Right-handed alpha
Helix 86	86	D	444	460	Right-handed alpha
Helix 87	87	D	460	471	Right-handed alpha
Helix 88	88	D	476	495	Right-handed alpha
Helix 89	89	E	8	30	Right-handed alpha
Helix 90	90	E	37	52	Right-handed alpha
Helix 91	91	E	101	118	Right-handed alpha
Helix 92	92	E	132	136	Right-handed 310
Helix 93	93	E	137	154	Right-handed alpha
Helix 94	94	E	173	187	Right-handed alpha
Helix 95	95	E	193	197	Right-handed 310
Helix 96	96	E	202	206	Right-handed 310
Helix 97	97	E	213	228	Right-handed alpha
Helix 98	98	E	229	237	Right-handed alpha
Helix 99	99	E	253	265	Right-handed alpha
Helix 100	100	E	287	297	Right-handed alpha
Helix 101	101	E	353	362	Right-handed alpha
Helix 102	102	E	369	374	Right-handed alpha
Helix 103	103	E	376	391	Right-handed alpha
Helix 104	104	E	398	418	Right-handed alpha
Helix 105	105	E	419	420	Right-handed 310
Helix 106	106	E	421	425	Right-handed 310
Helix 107	107	E	433	441	Right-handed alpha
Helix 108	108	E	444	460	Right-handed alpha
Helix 109	109	E	460	471	Right-handed alpha
Helix 110	110	E	476	495	Right-handed alpha
Helix 111	111	F	8	30	Right-handed alpha
Helix 112	112	F	37	52	Right-handed alpha
Helix 113	113	F	101	118	Right-handed alpha
Helix 114	114	F	132	136	Right-handed 310
Helix 115	115	F	137	154	Right-handed alpha
Helix 116	116	F	173	187	Right-handed alpha
Helix 117	117	F	193	197	Right-handed 310
Helix 118	118	F	202	206	Right-handed 310
Helix 119	119	F	213	228	Right-handed alpha
Helix 120	120	F	229	237	Right-handed alpha
Helix 121	121	F	253	265	Right-handed alpha
Helix 122	122	F	287	297	Right-handed alpha
Helix 123	123	F	353	362	Right-handed alpha
Helix 124	124	F	369	374	Right-handed alpha
Helix 125	125	F	376	391	Right-handed alpha
Helix 126	126	F	398	418	Right-handed alpha
Helix 127	127	F	419	420	Right-handed 310
Helix 128	128	F	421	425	Right-handed 310
Helix 129	129	F	433	441	Right-handed alpha
Helix 130	130	F	444	460	Right-handed alpha
Helix 131	131	F	460	471	Right-handed alpha
Helix 132	132	F	476	495	Right-handed alpha

There are 15 sheets in PDB entry 3JD2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	166	first strand
Strand 2	A	89	95	parallel
Strand 3	A	123	129	parallel
Strand 4	A	77	81	anti-parallel
Strand 5	A	57	60	anti-parallel
Strand 6	E	57	60	anti-parallel
Strand 7	E	77	81	anti-parallel
Strand 8	E	123	129	anti-parallel
Strand 9	E	89	95	parallel
Strand 10	E	163	166	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	66	first strand
Strand 2	A	72	75	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	278	281	anti-parallel
Strand 3	A	269	275	anti-parallel
Strand 4	A	246	249	parallel
Strand 5	A	321	323	parallel
Strand 6	A	343	345	parallel
Strand 7	A	366	368	parallel

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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	166	first strand
Strand 2	B	89	95	parallel
Strand 3	B	123	129	parallel
Strand 4	B	77	81	anti-parallel
Strand 5	B	57	60	anti-parallel
Strand 6	D	57	60	anti-parallel
Strand 7	D	77	81	anti-parallel
Strand 8	D	123	129	anti-parallel
Strand 9	D	89	95	parallel
Strand 10	D	163	166	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	66	first strand
Strand 2	B	72	75	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	278	281	anti-parallel
Strand 3	B	269	275	anti-parallel
Strand 4	B	246	249	parallel
Strand 5	B	321	323	parallel
Strand 6	B	343	345	parallel
Strand 7	B	366	368	parallel

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There are 10 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	166	first strand
Strand 2	C	89	95	parallel
Strand 3	C	123	129	parallel
Strand 4	C	77	81	anti-parallel
Strand 5	C	57	60	anti-parallel
Strand 6	F	57	60	anti-parallel
Strand 7	F	77	81	anti-parallel
Strand 8	F	123	129	anti-parallel
Strand 9	F	89	95	parallel
Strand 10	F	163	166	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	66	first strand
Strand 2	C	72	75	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	278	281	anti-parallel
Strand 3	C	269	275	anti-parallel
Strand 4	C	246	249	parallel
Strand 5	C	321	323	parallel
Strand 6	C	343	345	parallel
Strand 7	C	366	368	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	66	first strand
Strand 2	D	72	75	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	D	278	281	anti-parallel
Strand 3	D	269	275	anti-parallel
Strand 4	D	246	249	parallel
Strand 5	D	321	323	parallel
Strand 6	D	343	345	parallel
Strand 7	D	366	368	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	66	first strand
Strand 2	E	72	75	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	308	309	first strand
Strand 2	E	278	281	anti-parallel
Strand 3	E	269	275	anti-parallel
Strand 4	E	246	249	parallel
Strand 5	E	321	323	parallel
Strand 6	E	343	345	parallel
Strand 7	E	366	368	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	66	first strand
Strand 2	F	72	75	anti-parallel

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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	308	309	first strand
Strand 2	F	278	281	anti-parallel
Strand 3	F	269	275	anti-parallel
Strand 4	F	246	249	parallel
Strand 5	F	321	323	parallel
Strand 6	F	343	345	parallel
Strand 7	F	366	368	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JD2

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JD2