Analysis of interatomic Contacts of Structural Units in PDB entry:
3JD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JD3 entry

There are 6 chains in PDB entry 3JD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6THR 501
B
 ASP 6THR 501
C
 ASP 6THR 501
D
 ASP 6THR 501
E
 ASP 6THR 501
F
 ASP 6THR 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are144 helices in PDB entry 3JD3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 32Right-handed alpha
Helix 2
2
A
39 53Right-handed alpha
Helix 3
3
A
84 87Right-handed 310
Helix 4
4
A
100 118Right-handed alpha
Helix 5
5
A
139 155Right-handed alpha
Helix 6
6
A
172 184Right-handed alpha
Helix 7
7
A
187 191Right-handed 310
Helix 8
8
A
193 197Right-handed 310
Helix 9
9
A
202 206Right-handed 310
Helix 10
10
A
213 224Right-handed alpha
Helix 11
11
A
229 234Right-handed alpha
Helix 12
12
A
241 244Right-handed 310
Helix 13
13
A
255 265Right-handed alpha
Helix 14
14
A
287 298Right-handed alpha
Helix 15
15
A
313 317Right-handed 310
Helix 16
16
A
335 339Right-handed 310
Helix 17
17
A
353 363Right-handed alpha
Helix 18
18
A
369 374Right-handed alpha
Helix 19
19
A
375 388Right-handed alpha
Helix 20
20
A
398 407Right-handed alpha
Helix 21
21
A
409 421Right-handed alpha
Helix 22
22
A
433 442Right-handed alpha
Helix 23
23
A
444 471Right-handed alpha
Helix 24
24
A
476 497Right-handed alpha
Helix 25
25
B
8 32Right-handed alpha
Helix 26
26
B
39 53Right-handed alpha
Helix 27
27
B
84 87Right-handed 310
Helix 28
28
B
100 118Right-handed alpha
Helix 29
29
B
139 155Right-handed alpha
Helix 30
30
B
172 184Right-handed alpha
Helix 31
31
B
187 191Right-handed 310
Helix 32
32
B
193 197Right-handed 310
Helix 33
33
B
202 206Right-handed 310
Helix 34
34
B
213 224Right-handed alpha
Helix 35
35
B
229 234Right-handed alpha
Helix 36
36
B
241 244Right-handed 310
Helix 37
37
B
255 265Right-handed alpha
Helix 38
38
B
287 298Right-handed alpha
Helix 39
39
B
313 317Right-handed 310
Helix 40
40
B
335 339Right-handed 310
Helix 41
41
B
353 363Right-handed alpha
Helix 42
42
B
369 374Right-handed alpha
Helix 43
43
B
375 388Right-handed alpha
Helix 44
44
B
398 407Right-handed alpha
Helix 45
45
B
409 421Right-handed alpha
Helix 46
46
B
433 442Right-handed alpha
Helix 47
47
B
444 471Right-handed alpha
Helix 48
48
B
476 497Right-handed alpha
Helix 49
49
C
8 32Right-handed alpha
Helix 50
50
C
39 53Right-handed alpha
Helix 51
51
C
84 87Right-handed 310
Helix 52
52
C
100 118Right-handed alpha
Helix 53
53
C
139 155Right-handed alpha
Helix 54
54
C
172 184Right-handed alpha
Helix 55
55
C
187 191Right-handed 310
Helix 56
56
C
193 197Right-handed 310
Helix 57
57
C
202 206Right-handed 310
Helix 58
58
C
213 224Right-handed alpha
Helix 59
59
C
229 234Right-handed alpha
Helix 60
60
C
241 244Right-handed 310
Helix 61
61
C
255 265Right-handed alpha
Helix 62
62
C
287 298Right-handed alpha
Helix 63
63
C
313 317Right-handed 310
Helix 64
64
C
335 339Right-handed 310
Helix 65
65
C
353 363Right-handed alpha
Helix 66
66
C
369 374Right-handed alpha
Helix 67
67
C
375 388Right-handed alpha
Helix 68
68
C
398 407Right-handed alpha
Helix 69
69
C
409 421Right-handed alpha
Helix 70
70
C
433 442Right-handed alpha
Helix 71
71
C
444 471Right-handed alpha
Helix 72
72
C
476 497Right-handed alpha
Helix 73
73
D
8 32Right-handed alpha
Helix 74
74
D
39 53Right-handed alpha
Helix 75
75
D
84 87Right-handed 310
Helix 76
76
D
100 118Right-handed alpha
Helix 77
77
D
139 155Right-handed alpha
Helix 78
78
D
172 184Right-handed alpha
Helix 79
79
D
187 191Right-handed 310
Helix 80
80
D
193 197Right-handed 310
Helix 81
81
D
202 206Right-handed 310
Helix 82
82
D
213 224Right-handed alpha
Helix 83
83
D
229 234Right-handed alpha
Helix 84
84
D
241 244Right-handed 310
Helix 85
85
D
255 265Right-handed alpha
Helix 86
86
D
287 298Right-handed alpha
Helix 87
87
D
313 317Right-handed 310
Helix 88
88
D
335 339Right-handed 310
Helix 89
89
D
353 363Right-handed alpha
Helix 90
90
D
369 374Right-handed alpha
Helix 91
91
D
375 388Right-handed alpha
Helix 92
92
D
398 407Right-handed alpha
Helix 93
93
D
409 421Right-handed alpha
Helix 94
94
D
433 442Right-handed alpha
Helix 95
95
D
444 471Right-handed alpha
Helix 96
96
D
476 497Right-handed alpha
Helix 97
97
E
8 32Right-handed alpha
Helix 98
98
E
39 53Right-handed alpha
Helix 99
99
E
84 87Right-handed 310
Helix 100
100
E
100 118Right-handed alpha
Helix 101
101
E
139 155Right-handed alpha
Helix 102
102
E
172 184Right-handed alpha
Helix 103
103
E
187 191Right-handed 310
Helix 104
104
E
193 197Right-handed 310
Helix 105
105
E
202 206Right-handed 310
Helix 106
106
E
213 224Right-handed alpha
Helix 107
107
E
229 234Right-handed alpha
Helix 108
108
E
241 244Right-handed 310
Helix 109
109
E
255 265Right-handed alpha
Helix 110
110
E
287 298Right-handed alpha
Helix 111
111
E
313 317Right-handed 310
Helix 112
112
E
335 339Right-handed 310
Helix 113
113
E
353 363Right-handed alpha
Helix 114
114
E
369 374Right-handed alpha
Helix 115
115
E
375 388Right-handed alpha
Helix 116
116
E
398 407Right-handed alpha
Helix 117
117
E
409 421Right-handed alpha
Helix 118
118
E
433 442Right-handed alpha
Helix 119
119
E
444 471Right-handed alpha
Helix 120
120
E
476 497Right-handed alpha
Helix 121
121
F
8 32Right-handed alpha
Helix 122
122
F
39 53Right-handed alpha
Helix 123
123
F
84 87Right-handed 310
Helix 124
124
F
100 118Right-handed alpha
Helix 125
125
F
139 155Right-handed alpha
Helix 126
126
F
172 184Right-handed alpha
Helix 127
127
F
187 191Right-handed 310
Helix 128
128
F
193 197Right-handed 310
Helix 129
129
F
202 206Right-handed 310
Helix 130
130
F
213 224Right-handed alpha
Helix 131
131
F
229 234Right-handed alpha
Helix 132
132
F
241 244Right-handed 310
Helix 133
133
F
255 265Right-handed alpha
Helix 134
134
F
287 298Right-handed alpha
Helix 135
135
F
313 317Right-handed 310
Helix 136
136
F
335 339Right-handed 310
Helix 137
137
F
353 363Right-handed alpha
Helix 138
138
F
369 374Right-handed alpha
Helix 139
139
F
375 388Right-handed alpha
Helix 140
140
F
398 407Right-handed alpha
Helix 141
141
F
409 421Right-handed alpha
Helix 142
142
F
433 442Right-handed alpha
Helix 143
143
F
444 471Right-handed alpha
Helix 144
144
F
476 497Right-handed alpha
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There are 27 sheets in PDB entry 3JD3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 167first strand
Strand 2
A
89 95parallel
Strand 3
A
124 129parallel
Strand 4
A
77 83anti-parallel
Strand 5
A
57 61anti-parallel
Strand 6
E
57 61anti-parallel
Strand 7
E
77 83anti-parallel
Strand 8
E
124 129anti-parallel
Strand 9
E
89 95parallel
Strand 10
E
163 167parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
72 73anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
269 270parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
278 281anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
366 368parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 167first strand
Strand 2
B
89 95parallel
Strand 3
B
124 129parallel
Strand 4
B
77 83anti-parallel
Strand 5
B
57 61anti-parallel
Strand 6
D
57 61anti-parallel
Strand 7
D
77 83anti-parallel
Strand 8
D
124 129anti-parallel
Strand 9
D
89 95parallel
Strand 10
D
163 167parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 66first strand
Strand 2
B
72 73anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 247first strand
Strand 2
B
269 270parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 275first strand
Strand 2
B
278 281anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 345first strand
Strand 2
B
366 368parallel
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There are 10 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 167first strand
Strand 2
C
89 95parallel
Strand 3
C
124 129parallel
Strand 4
C
77 83anti-parallel
Strand 5
C
57 61anti-parallel
Strand 6
F
57 61anti-parallel
Strand 7
F
77 83anti-parallel
Strand 8
F
124 129anti-parallel
Strand 9
F
89 95parallel
Strand 10
F
163 167parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 66first strand
Strand 2
C
72 73anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
246 247first strand
Strand 2
C
269 270parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
272 275first strand
Strand 2
C
278 281anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
343 345first strand
Strand 2
C
366 368parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
65 66first strand
Strand 2
D
72 73anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
246 247first strand
Strand 2
D
269 270parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
272 275first strand
Strand 2
D
278 281anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
343 345first strand
Strand 2
D
366 368parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
65 66first strand
Strand 2
E
72 73anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
246 247first strand
Strand 2
E
269 270parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
272 275first strand
Strand 2
E
278 281anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
343 345first strand
Strand 2
E
366 368parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
65 66first strand
Strand 2
F
72 73anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
246 247first strand
Strand 2
F
269 270parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
272 275first strand
Strand 2
F
278 281anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
343 345first strand
Strand 2
F
366 368parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il