Analysis of interatomic Contacts of Structural Units in PDB entry:
3JD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JD4 entry

There are 6 chains in PDB entry 3JD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5THR 501
B
 ASP 5THR 501
C
 ASP 5THR 501
D
 ASP 5THR 501
E
 ASP 5THR 501
F
 ASP 5THR 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are132 helices in PDB entry 3JD4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 30Right-handed alpha
Helix 2
2
A
37 53Right-handed alpha
Helix 3
3
A
100 118Right-handed alpha
Helix 4
4
A
139 155Right-handed alpha
Helix 5
5
A
172 187Right-handed alpha
Helix 6
6
A
193 198Right-handed 310
Helix 7
7
A
202 206Right-handed 310
Helix 8
8
A
213 228Right-handed alpha
Helix 9
9
A
229 237Right-handed alpha
Helix 10
10
A
253 265Right-handed alpha
Helix 11
11
A
287 298Right-handed alpha
Helix 12
12
A
313 317Right-handed 310
Helix 13
13
A
335 339Right-handed 310
Helix 14
14
A
353 363Right-handed alpha
Helix 15
15
A
369 374Right-handed alpha
Helix 16
16
A
374 388Right-handed alpha
Helix 17
17
A
395 397Right-handed 310
Helix 18
18
A
398 421Right-handed alpha
Helix 19
19
A
422 425Right-handed 310
Helix 20
20
A
433 439Right-handed alpha
Helix 21
21
A
444 471Right-handed alpha
Helix 22
22
A
476 496Right-handed alpha
Helix 23
23
B
8 30Right-handed alpha
Helix 24
24
B
37 53Right-handed alpha
Helix 25
25
B
100 118Right-handed alpha
Helix 26
26
B
139 155Right-handed alpha
Helix 27
27
B
172 187Right-handed alpha
Helix 28
28
B
193 198Right-handed 310
Helix 29
29
B
202 206Right-handed 310
Helix 30
30
B
213 228Right-handed alpha
Helix 31
31
B
229 237Right-handed alpha
Helix 32
32
B
253 265Right-handed alpha
Helix 33
33
B
287 298Right-handed alpha
Helix 34
34
B
313 317Right-handed 310
Helix 35
35
B
335 339Right-handed 310
Helix 36
36
B
353 363Right-handed alpha
Helix 37
37
B
369 374Right-handed alpha
Helix 38
38
B
374 388Right-handed alpha
Helix 39
39
B
395 397Right-handed 310
Helix 40
40
B
398 421Right-handed alpha
Helix 41
41
B
422 425Right-handed 310
Helix 42
42
B
433 439Right-handed alpha
Helix 43
43
B
444 471Right-handed alpha
Helix 44
44
B
476 496Right-handed alpha
Helix 45
45
C
8 30Right-handed alpha
Helix 46
46
C
37 53Right-handed alpha
Helix 47
47
C
100 118Right-handed alpha
Helix 48
48
C
139 155Right-handed alpha
Helix 49
49
C
172 187Right-handed alpha
Helix 50
50
C
193 198Right-handed 310
Helix 51
51
C
202 206Right-handed 310
Helix 52
52
C
213 228Right-handed alpha
Helix 53
53
C
229 237Right-handed alpha
Helix 54
54
C
253 265Right-handed alpha
Helix 55
55
C
287 298Right-handed alpha
Helix 56
56
C
313 317Right-handed 310
Helix 57
57
C
335 339Right-handed 310
Helix 58
58
C
353 363Right-handed alpha
Helix 59
59
C
369 374Right-handed alpha
Helix 60
60
C
374 388Right-handed alpha
Helix 61
61
C
395 397Right-handed 310
Helix 62
62
C
398 421Right-handed alpha
Helix 63
63
C
422 425Right-handed 310
Helix 64
64
C
433 439Right-handed alpha
Helix 65
65
C
444 471Right-handed alpha
Helix 66
66
C
476 496Right-handed alpha
Helix 67
67
D
8 30Right-handed alpha
Helix 68
68
D
37 53Right-handed alpha
Helix 69
69
D
100 118Right-handed alpha
Helix 70
70
D
139 155Right-handed alpha
Helix 71
71
D
172 187Right-handed alpha
Helix 72
72
D
193 198Right-handed 310
Helix 73
73
D
202 206Right-handed 310
Helix 74
74
D
213 228Right-handed alpha
Helix 75
75
D
229 237Right-handed alpha
Helix 76
76
D
253 265Right-handed alpha
Helix 77
77
D
287 298Right-handed alpha
Helix 78
78
D
313 317Right-handed 310
Helix 79
79
D
335 339Right-handed 310
Helix 80
80
D
353 363Right-handed alpha
Helix 81
81
D
369 374Right-handed alpha
Helix 82
82
D
374 388Right-handed alpha
Helix 83
83
D
395 397Right-handed 310
Helix 84
84
D
398 421Right-handed alpha
Helix 85
85
D
422 425Right-handed 310
Helix 86
86
D
433 439Right-handed alpha
Helix 87
87
D
444 471Right-handed alpha
Helix 88
88
D
476 496Right-handed alpha
Helix 89
89
E
8 30Right-handed alpha
Helix 90
90
E
37 53Right-handed alpha
Helix 91
91
E
100 118Right-handed alpha
Helix 92
92
E
139 155Right-handed alpha
Helix 93
93
E
172 187Right-handed alpha
Helix 94
94
E
193 198Right-handed 310
Helix 95
95
E
202 206Right-handed 310
Helix 96
96
E
213 228Right-handed alpha
Helix 97
97
E
229 237Right-handed alpha
Helix 98
98
E
253 265Right-handed alpha
Helix 99
99
E
287 298Right-handed alpha
Helix 100
100
E
313 317Right-handed 310
Helix 101
101
E
335 339Right-handed 310
Helix 102
102
E
353 363Right-handed alpha
Helix 103
103
E
369 374Right-handed alpha
Helix 104
104
E
374 388Right-handed alpha
Helix 105
105
E
395 397Right-handed 310
Helix 106
106
E
398 421Right-handed alpha
Helix 107
107
E
422 425Right-handed 310
Helix 108
108
E
433 439Right-handed alpha
Helix 109
109
E
444 471Right-handed alpha
Helix 110
110
E
476 496Right-handed alpha
Helix 111
111
F
8 30Right-handed alpha
Helix 112
112
F
37 53Right-handed alpha
Helix 113
113
F
100 118Right-handed alpha
Helix 114
114
F
139 155Right-handed alpha
Helix 115
115
F
172 187Right-handed alpha
Helix 116
116
F
193 198Right-handed 310
Helix 117
117
F
202 206Right-handed 310
Helix 118
118
F
213 228Right-handed alpha
Helix 119
119
F
229 237Right-handed alpha
Helix 120
120
F
253 265Right-handed alpha
Helix 121
121
F
287 298Right-handed alpha
Helix 122
122
F
313 317Right-handed 310
Helix 123
123
F
335 339Right-handed 310
Helix 124
124
F
353 363Right-handed alpha
Helix 125
125
F
369 374Right-handed alpha
Helix 126
126
F
374 388Right-handed alpha
Helix 127
127
F
395 397Right-handed 310
Helix 128
128
F
398 421Right-handed alpha
Helix 129
129
F
422 425Right-handed 310
Helix 130
130
F
433 439Right-handed alpha
Helix 131
131
F
444 471Right-handed alpha
Helix 132
132
F
476 496Right-handed alpha
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There are 24 sheets in PDB entry 3JD4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
77 81anti-parallel
Strand 3
A
123 129anti-parallel
Strand 4
A
89 95parallel
Strand 5
A
163 166parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
72 73anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 250first strand
Strand 2
A
269 274parallel
Strand 3
A
279 281anti-parallel
Strand 4
A
308 310anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
343 344parallel
Strand 3
A
366 367parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
77 81anti-parallel
Strand 3
B
123 129anti-parallel
Strand 4
B
89 95parallel
Strand 5
B
163 166parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 66first strand
Strand 2
B
72 73anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 250first strand
Strand 2
B
269 274parallel
Strand 3
B
279 281anti-parallel
Strand 4
B
308 310anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 322first strand
Strand 2
B
343 344parallel
Strand 3
B
366 367parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 60first strand
Strand 2
C
77 81anti-parallel
Strand 3
C
123 129anti-parallel
Strand 4
C
89 95parallel
Strand 5
C
163 166parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 66first strand
Strand 2
C
72 73anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
246 250first strand
Strand 2
C
269 274parallel
Strand 3
C
279 281anti-parallel
Strand 4
C
308 310anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
321 322first strand
Strand 2
C
343 344parallel
Strand 3
C
366 367parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 60first strand
Strand 2
D
77 81anti-parallel
Strand 3
D
123 129anti-parallel
Strand 4
D
89 95parallel
Strand 5
D
163 166parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
65 66first strand
Strand 2
D
72 73anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
246 250first strand
Strand 2
D
269 274parallel
Strand 3
D
279 281anti-parallel
Strand 4
D
308 310anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
321 322first strand
Strand 2
D
343 344parallel
Strand 3
D
366 367parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
57 60first strand
Strand 2
E
77 81anti-parallel
Strand 3
E
123 129anti-parallel
Strand 4
E
89 95parallel
Strand 5
E
163 166parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
65 66first strand
Strand 2
E
72 73anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
246 250first strand
Strand 2
E
269 274parallel
Strand 3
E
279 281anti-parallel
Strand 4
E
308 310anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
321 322first strand
Strand 2
E
343 344parallel
Strand 3
E
366 367parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
57 60first strand
Strand 2
F
77 81anti-parallel
Strand 3
F
123 129anti-parallel
Strand 4
F
89 95parallel
Strand 5
F
163 166parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
65 66first strand
Strand 2
F
72 73anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
246 250first strand
Strand 2
F
269 274parallel
Strand 3
F
279 281anti-parallel
Strand 4
F
308 310anti-parallel
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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
321 322first strand
Strand 2
F
343 344parallel
Strand 3
F
366 367parallel
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