Analysis of interatomic Contacts of Structural Units in PDB entry:
3JD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JD8 entry

There is 1 chain in PDB entry 3JD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 23ILE 1251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 3JD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 54Right-handed 310
Helix 2
2
A
55 63Right-handed alpha
Helix 3
3
A
64 67Right-handed 310
Helix 4
4
A
76 86Right-handed alpha
Helix 5
5
A
87 95Right-handed alpha
Helix 6
6
A
97 114Right-handed alpha
Helix 7
7
A
116 119Right-handed 310
Helix 8
8
A
149 161Right-handed alpha
Helix 9
9
A
172 177Right-handed alpha
Helix 10
10
A
185 194Right-handed alpha
Helix 11
11
A
195 199Right-handed 310
Helix 12
12
A
260 288Right-handed alpha
Helix 13
13
A
331 348Right-handed alpha
Helix 14
14
A
351 369Right-handed alpha
Helix 15
15
A
387 400Right-handed alpha
Helix 16
16
A
432 435Right-handed 310
Helix 17
17
A
436 452Right-handed alpha
Helix 18
18
A
464 468Right-handed alpha
Helix 19
19
A
483 489Right-handed 310
Helix 20
20
A
491 497Right-handed alpha
Helix 21
21
A
510 517Right-handed alpha
Helix 22
22
A
542 545Right-handed 310
Helix 23
23
A
554 558Right-handed 310
Helix 24
24
A
573 594Right-handed alpha
Helix 25
25
A
606 617Right-handed alpha
Helix 26
26
A
618 638Right-handed alpha
Helix 27
27
A
644 666Right-handed alpha
Helix 28
28
A
673 698Right-handed alpha
Helix 29
29
A
705 714Right-handed alpha
Helix 30
30
A
716 732Right-handed alpha
Helix 31
31
A
741 772Right-handed alpha
Helix 32
32
A
805 830Right-handed alpha
Helix 33
33
A
833 851Right-handed alpha
Helix 34
34
A
864 876Right-handed alpha
Helix 35
37
A
987 995Right-handed alpha
Helix 36
38
A
997 1005Right-handed alpha
Helix 37
39
A
1047 1069Right-handed alpha
Helix 38
40
A
1084 1089Right-handed alpha
Helix 39
41
A
1090 1092Right-handed 310
Helix 40
42
A
1093 1113Right-handed alpha
Helix 41
43
A
1122 1144Right-handed alpha
Helix 42
44
A
1150 1174Right-handed alpha
Helix 43
45
A
1184 1214Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 3JD8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 35first strand
Strand 2
A
38 43anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
72 73anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 130first strand
Strand 2
A
137 148anti-parallel
Strand 3
A
204 209parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 548first strand
Strand 2
A
560 567anti-parallel
Strand 3
A
404 411anti-parallel
Strand 4
A
600 602anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 419first strand
Strand 2
A
430 431anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 457first strand
Strand 2
A
460 463anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 500first strand
Strand 2
A
505 507anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il