Analysis of interatomic Contacts of Structural Units in PDB entry:
3JPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JPY entry

There is 1 chain in PDB entry 3JPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 32MET 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3JPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
78 91Right-handed alpha
Helix 2
2
A
107 118Right-handed alpha
Helix 3
3
A
128 131Right-handed 310
Helix 4
4
A
150 163Right-handed alpha
Helix 5
5
A
179 191Right-handed alpha
Helix 6
6
A
216 220Right-handed alpha
Helix 7
7
A
234 245Right-handed alpha
Helix 8
8
A
260 263Right-handed alpha
Helix 9
9
A
289 310Right-handed alpha
Helix 10
10
A
329 339Right-handed alpha
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There are 3 sheets in PDB entry 3JPY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 71first strand
Strand 2
A
34 42parallel
Strand 3
A
97 101parallel
Strand 4
A
123 127parallel
Strand 5
A
143 145parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 204first strand
Strand 2
A
168 173parallel
Strand 3
A
227 231parallel
Strand 4
A
255 258parallel
Strand 5
A
277 282parallel
Strand 6
A
362 367anti-parallel
Strand 7
A
373 379anti-parallel
Strand 8
A
384 386anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
347 348anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il