Analysis of interatomic Contacts of Structural Units in PDB entry:
3JQ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JQ0 entry

There is 1 chain in PDB entry 3JQ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 37GLU 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3JQ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 57Right-handed alpha
Helix 2
2
A
57 66Right-handed alpha
Helix 3
3
A
84 88Right-handed 310
Helix 4
4
A
101 104Right-handed 310
Helix 5
5
A
105 123Right-handed alpha
Helix 6
6
A
127 154Right-handed alpha
Helix 7
7
A
179 199Right-handed alpha
Helix 8
8
A
212 231Right-handed alpha
Helix 9
9
A
234 249Right-handed alpha
Helix 10
10
A
259 265Right-handed alpha
Helix 11
11
A
266 269Right-handed 310
Helix 12
12
A
286 291Right-handed 310
Helix 13
13
A
292 297Right-handed alpha
Helix 14
14
A
299 306Right-handed alpha
Helix 15
15
A
318 323Right-handed 310
Helix 16
16
A
333 338Right-handed 310
Helix 17
17
A
345 350Right-handed alpha
Helix 18
18
A
395 409Right-handed alpha
Helix 19
19
A
413 426Right-handed alpha
Helix 20
20
A
426 433Right-handed alpha
Helix 21
21
A
433 438Right-handed alpha
Helix 22
22
A
444 449Right-handed alpha
Helix 23
23
A
456 459Right-handed 310
Helix 24
24
A
460 473Right-handed alpha
Helix 25
25
A
478 487Right-handed alpha
Helix 26
26
A
487 495Right-handed alpha
Helix 27
27
A
498 502Right-handed 310
Helix 28
28
A
507 514Right-handed alpha
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There are 3 sheets in PDB entry 3JQ0. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
330 331anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 278first strand
Strand 2
A
390 394anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 357first strand
Strand 2
A
363 370anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il