Analysis of interatomic Contacts of Structural Units in PDB entry:
3JQ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JQ1 entry

There are 2 chains in PDB entry 3JQ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 37TRP 513
B
 THR 37TRP 513
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3JQ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 52Right-handed alpha
Helix 2
2
A
53 58Right-handed alpha
Helix 3
3
A
66 75Right-handed alpha
Helix 4
4
A
86 94Right-handed alpha
Helix 5
5
A
101 129Right-handed alpha
Helix 6
6
A
130 132Right-handed 310
Helix 7
7
A
133 160Right-handed alpha
Helix 8
8
A
181 200Right-handed alpha
Helix 9
9
A
210 225Right-handed alpha
Helix 10
10
A
227 236Right-handed alpha
Helix 11
11
A
237 240Right-handed 310
Helix 12
12
A
250 256Right-handed 310
Helix 13
13
A
293 299Right-handed alpha
Helix 14
14
A
300 304Right-handed 310
Helix 15
15
A
312 321Right-handed alpha
Helix 16
16
A
330 336Right-handed alpha
Helix 17
17
A
351 355Right-handed alpha
Helix 18
18
A
356 360Right-handed 310
Helix 19
19
A
392 407Right-handed alpha
Helix 20
20
A
408 423Right-handed alpha
Helix 21
21
A
433 449Right-handed alpha
Helix 22
22
A
454 462Right-handed alpha
Helix 23
23
A
464 471Right-handed alpha
Helix 24
24
A
473 482Right-handed alpha
Helix 25
25
A
491 493Right-handed 310
Helix 26
26
A
497 504Right-handed alpha
Helix 27
27
B
41 52Right-handed alpha
Helix 28
28
B
53 58Right-handed alpha
Helix 29
29
B
66 75Right-handed alpha
Helix 30
30
B
86 94Right-handed alpha
Helix 31
31
B
101 128Right-handed alpha
Helix 32
32
B
129 132Right-handed 310
Helix 33
33
B
133 160Right-handed alpha
Helix 34
34
B
181 200Right-handed alpha
Helix 35
35
B
210 225Right-handed alpha
Helix 36
36
B
227 236Right-handed alpha
Helix 37
37
B
237 240Right-handed 310
Helix 38
38
B
250 256Right-handed 310
Helix 39
39
B
293 299Right-handed alpha
Helix 40
40
B
300 304Right-handed 310
Helix 41
41
B
312 321Right-handed alpha
Helix 42
42
B
330 336Right-handed alpha
Helix 43
43
B
351 355Right-handed alpha
Helix 44
44
B
356 360Right-handed 310
Helix 45
45
B
392 407Right-handed alpha
Helix 46
46
B
408 423Right-handed alpha
Helix 47
47
B
433 449Right-handed alpha
Helix 48
48
B
454 462Right-handed alpha
Helix 49
49
B
464 473Right-handed alpha
Helix 50
50
B
473 482Right-handed alpha
Helix 51
51
B
491 493Right-handed 310
Helix 52
52
B
497 504Right-handed alpha
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There are 10 sheets in PDB entry 3JQ1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
309 311anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 269first strand
Strand 2
A
387 391anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 338first strand
Strand 2
A
364 365anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 346first strand
Strand 2
A
349 350anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 485first strand
Strand 2
A
488 489anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 82first strand
Strand 2
B
309 311anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 269first strand
Strand 2
B
387 391anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 338first strand
Strand 2
B
364 365anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 346first strand
Strand 2
B
349 350anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
484 485first strand
Strand 2
B
488 489anti-parallel
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