Analysis of interatomic Contacts of Structural Units in PDB entry:
3JQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JQW entry

There are 3 chains in PDB entry 3JQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 863VAL 979
B
 VAL 862ARG 981
C
 GLN 861ARG 981
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 3JQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
874 878Right-handed 310
Helix 2
2
B
874 878Right-handed 310
Helix 3
3
C
874 878Right-handed 310
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There are 6 sheets in PDB entry 3JQW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
888 892first strand
Strand 2
A
969 977anti-parallel
Strand 3
A
909 917anti-parallel
Strand 4
A
944 951anti-parallel
Strand 5
A
939 940anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
899 905first strand
Strand 2
A
955 965anti-parallel
Strand 3
A
922 928anti-parallel
Strand 4
A
934 937anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
888 892first strand
Strand 2
B
955 977anti-parallel
Strand 3
B
920 928anti-parallel
Strand 4
B
934 937anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
899 905first strand
Strand 2
B
955 977anti-parallel
Strand 3
B
909 917anti-parallel
Strand 4
B
944 951anti-parallel
Strand 5
B
939 940anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
888 894first strand
Strand 2
C
967 976anti-parallel
Strand 3
C
909 917anti-parallel
Strand 4
C
944 951anti-parallel
Strand 5
C
939 940anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
899 905first strand
Strand 2
C
955 965anti-parallel
Strand 3
C
922 929anti-parallel
Strand 4
C
934 937anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il