Analysis of interatomic Contacts of Structural Units in PDB entry:
3JQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JQY entry

There are 3 chains in PDB entry 3JQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 26LEU 245
A
 LYS 19HIS 251
C
 GLN 28THR 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3JQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
228 231Right-handed 310
Helix 2
2
B
232 245Right-handed alpha
Helix 3
3
A
228 231Right-handed 310
Helix 4
4
A
232 244Right-handed alpha
Helix 5
5
C
228 231Right-handed 310
Helix 6
6
C
232 243Right-handed alpha
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There are 12 sheets in PDB entry 3JQY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 35first strand
Strand 2
B
53 58parallel
Strand 3
B
71 80parallel
Strand 4
B
93 101parallel
Strand 5
B
119 121parallel
Strand 6
B
139 142parallel
Strand 7
B
176 178parallel
Strand 8
B
195 196parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
63 66parallel
Strand 3
B
85 88parallel
Strand 4
B
105 108parallel
Strand 5
B
126 129parallel
Strand 6
B
164 166parallel
Strand 7
B
183 184parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
134 135parallel
Strand 3
B
171 172parallel
Strand 4
B
189 190parallel
Strand 5
B
204 207parallel
Strand 6
B
212 216anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
A
218 220anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 220first strand
Strand 2
C
149 151anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
53 58parallel
Strand 3
A
71 80parallel
Strand 4
A
93 101parallel
Strand 5
A
119 121parallel
Strand 6
A
139 142parallel
Strand 7
A
176 178parallel
Strand 8
A
195 196parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
63 66parallel
Strand 3
A
85 88parallel
Strand 4
A
105 108parallel
Strand 5
A
126 129parallel
Strand 6
A
164 166parallel
Strand 7
A
183 184parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
134 135parallel
Strand 3
A
171 172parallel
Strand 4
A
189 190parallel
Strand 5
A
204 207parallel
Strand 6
A
212 216anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
C
218 220anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 35first strand
Strand 2
C
53 58parallel
Strand 3
C
71 80parallel
Strand 4
C
93 101parallel
Strand 5
C
119 121parallel
Strand 6
C
139 142parallel
Strand 7
C
176 178parallel
Strand 8
C
195 196parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 44first strand
Strand 2
C
63 66parallel
Strand 3
C
85 88parallel
Strand 4
C
105 108parallel
Strand 5
C
126 129parallel
Strand 6
C
164 166parallel
Strand 7
C
183 184parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 114first strand
Strand 2
C
134 135parallel
Strand 3
C
171 172parallel
Strand 4
C
189 190parallel
Strand 5
C
204 207parallel
Strand 6
C
212 216anti-parallel
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