Analysis of interatomic Contacts of Structural Units in PDB entry:
3JR1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JR1 entry

There are 2 chains in PDB entry 3JR1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -5LYS 290
B
 ASN -5HIS 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3JR1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-5 14Right-handed alpha
Helix 2
2
A
52 69Right-handed alpha
Helix 3
3
A
102 117Right-handed alpha
Helix 4
4
A
143 152Right-handed alpha
Helix 5
5
A
152 164Right-handed alpha
Helix 6
6
A
169 182Right-handed alpha
Helix 7
7
A
196 198Right-handed 310
Helix 8
8
A
219 227Right-handed alpha
Helix 9
9
A
233 244Right-handed alpha
Helix 10
10
A
249 270Right-handed alpha
Helix 11
11
A
274 289Right-handed alpha
Helix 12
12
B
-5 14Right-handed alpha
Helix 13
13
B
52 69Right-handed alpha
Helix 14
14
B
102 117Right-handed alpha
Helix 15
15
B
143 152Right-handed alpha
Helix 16
16
B
152 164Right-handed alpha
Helix 17
17
B
169 181Right-handed alpha
Helix 18
18
B
196 198Right-handed 310
Helix 19
19
B
219 227Right-handed alpha
Helix 20
20
B
233 244Right-handed alpha
Helix 21
21
B
249 269Right-handed alpha
Helix 22
22
B
275 289Right-handed alpha
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There are 8 sheets in PDB entry 3JR1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
32 37anti-parallel
Strand 3
A
42 49anti-parallel
Strand 4
A
86 92anti-parallel
Strand 5
A
77 82anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
134 136anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
215 217anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
206 209anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 25first strand
Strand 2
B
32 37anti-parallel
Strand 3
B
42 49anti-parallel
Strand 4
B
86 92anti-parallel
Strand 5
B
77 82anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 131first strand
Strand 2
B
134 136anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 191first strand
Strand 2
B
215 217anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 203first strand
Strand 2
B
206 209anti-parallel
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