Analysis of interatomic Contacts of Structural Units in PDB entry:
3JRK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3JRK entry

There are 8 chains in PDB entry 3JRK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 1	MSE 322
B	THR 1	MSE 322
C	THR 1	MSE 322
D	THR 1	MSE 322
E	THR 1	MSE 322
F	THR 1	LYS 321
G	THR 1	MSE 322
H	THR 1	THR 319

There are130 helices in PDB entry 3JRK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1	11	Right-handed alpha
Helix 2	2	A	25	34	Right-handed alpha
Helix 3	3	A	41	57	Right-handed alpha
Helix 4	4	A	58	60	Right-handed 310
Helix 5	5	A	70	75	Right-handed alpha
Helix 6	6	A	108	115	Right-handed alpha
Helix 7	7	A	131	153	Right-handed alpha
Helix 8	8	A	172	177	Right-handed alpha
Helix 9	9	A	178	191	Right-handed alpha
Helix 10	10	A	192	196	Right-handed 310
Helix 11	11	A	207	211	Right-handed 310
Helix 12	12	A	222	235	Right-handed alpha
Helix 13	13	A	249	264	Right-handed alpha
Helix 14	14	A	273	278	Right-handed alpha
Helix 15	15	A	279	288	Right-handed alpha
Helix 16	16	A	288	315	Right-handed alpha
Helix 17	17	A	317	321	Right-handed 310
Helix 18	18	B	1	12	Right-handed alpha
Helix 19	19	B	25	34	Right-handed alpha
Helix 20	20	B	41	57	Right-handed alpha
Helix 21	21	B	58	60	Right-handed 310
Helix 22	22	B	70	76	Right-handed alpha
Helix 23	23	B	108	115	Right-handed alpha
Helix 24	24	B	131	153	Right-handed alpha
Helix 25	25	B	172	191	Right-handed alpha
Helix 26	26	B	192	196	Right-handed 310
Helix 27	27	B	207	211	Right-handed 310
Helix 28	28	B	222	235	Right-handed alpha
Helix 29	29	B	249	264	Right-handed alpha
Helix 30	30	B	273	278	Right-handed alpha
Helix 31	31	B	279	288	Right-handed alpha
Helix 32	32	B	288	315	Right-handed alpha
Helix 33	33	C	1	12	Right-handed alpha
Helix 34	34	C	25	34	Right-handed alpha
Helix 35	35	C	41	57	Right-handed alpha
Helix 36	36	C	58	60	Right-handed 310
Helix 37	37	C	70	75	Right-handed alpha
Helix 38	38	C	108	115	Right-handed alpha
Helix 39	39	C	131	152	Right-handed alpha
Helix 40	40	C	172	177	Right-handed alpha
Helix 41	41	C	178	191	Right-handed alpha
Helix 42	42	C	192	196	Right-handed 310
Helix 43	43	C	207	211	Right-handed 310
Helix 44	44	C	222	235	Right-handed alpha
Helix 45	45	C	249	264	Right-handed alpha
Helix 46	46	C	273	278	Right-handed alpha
Helix 47	47	C	279	288	Right-handed alpha
Helix 48	48	C	288	315	Right-handed alpha
Helix 49	49	C	317	321	Right-handed 310
Helix 50	50	D	1	11	Right-handed alpha
Helix 51	51	D	25	34	Right-handed alpha
Helix 52	52	D	41	57	Right-handed alpha
Helix 53	53	D	58	60	Right-handed 310
Helix 54	54	D	70	75	Right-handed alpha
Helix 55	55	D	108	115	Right-handed alpha
Helix 56	56	D	131	153	Right-handed alpha
Helix 57	57	D	172	191	Right-handed alpha
Helix 58	58	D	192	196	Right-handed 310
Helix 59	59	D	207	211	Right-handed 310
Helix 60	60	D	222	236	Right-handed alpha
Helix 61	61	D	249	264	Right-handed alpha
Helix 62	62	D	273	278	Right-handed alpha
Helix 63	63	D	279	287	Right-handed alpha
Helix 64	64	D	288	297	Right-handed alpha
Helix 65	65	D	298	315	Right-handed alpha
Helix 66	66	E	1	11	Right-handed alpha
Helix 67	67	E	25	34	Right-handed alpha
Helix 68	68	E	41	57	Right-handed alpha
Helix 69	69	E	58	60	Right-handed 310
Helix 70	70	E	70	76	Right-handed alpha
Helix 71	71	E	108	115	Right-handed alpha
Helix 72	72	E	131	152	Right-handed alpha
Helix 73	73	E	172	177	Right-handed alpha
Helix 74	74	E	178	191	Right-handed alpha
Helix 75	75	E	192	196	Right-handed 310
Helix 76	76	E	207	211	Right-handed 310
Helix 77	77	E	222	236	Right-handed alpha
Helix 78	78	E	249	264	Right-handed alpha
Helix 79	79	E	273	278	Right-handed alpha
Helix 80	80	E	279	288	Right-handed alpha
Helix 81	81	E	288	313	Right-handed alpha
Helix 82	82	E	317	322	Right-handed 310
Helix 83	83	F	1	11	Right-handed alpha
Helix 84	84	F	25	34	Right-handed alpha
Helix 85	85	F	41	57	Right-handed alpha
Helix 86	86	F	58	60	Right-handed 310
Helix 87	87	F	70	76	Right-handed alpha
Helix 88	88	F	108	115	Right-handed alpha
Helix 89	89	F	131	153	Right-handed alpha
Helix 90	90	F	172	177	Right-handed alpha
Helix 91	91	F	178	191	Right-handed alpha
Helix 92	92	F	192	196	Right-handed 310
Helix 93	93	F	207	211	Right-handed 310
Helix 94	94	F	222	235	Right-handed alpha
Helix 95	95	F	249	264	Right-handed alpha
Helix 96	96	F	273	278	Right-handed alpha
Helix 97	97	F	279	288	Right-handed alpha
Helix 98	98	F	288	298	Right-handed alpha
Helix 99	99	F	298	315	Right-handed alpha
Helix 100	100	F	317	321	Right-handed 310
Helix 101	101	G	1	10	Right-handed alpha
Helix 102	102	G	25	34	Right-handed alpha
Helix 103	103	G	41	57	Right-handed alpha
Helix 104	104	G	58	60	Right-handed 310
Helix 105	105	G	70	76	Right-handed alpha
Helix 106	106	G	108	115	Right-handed alpha
Helix 107	107	G	131	152	Right-handed alpha
Helix 108	108	G	172	177	Right-handed alpha
Helix 109	109	G	178	191	Right-handed alpha
Helix 110	110	G	192	196	Right-handed 310
Helix 111	111	G	207	211	Right-handed 310
Helix 112	112	G	222	235	Right-handed alpha
Helix 113	113	G	249	264	Right-handed alpha
Helix 114	114	G	273	278	Right-handed alpha
Helix 115	115	G	279	288	Right-handed alpha
Helix 116	116	G	288	313	Right-handed alpha
Helix 117	117	H	1	12	Right-handed alpha
Helix 118	118	H	25	34	Right-handed alpha
Helix 119	119	H	41	57	Right-handed alpha
Helix 120	120	H	58	60	Right-handed 310
Helix 121	121	H	70	76	Right-handed alpha
Helix 122	122	H	108	115	Right-handed alpha
Helix 123	123	H	131	153	Right-handed alpha
Helix 124	124	H	172	191	Right-handed alpha
Helix 125	125	H	192	196	Right-handed 310
Helix 126	126	H	207	211	Right-handed 310
Helix 127	127	H	222	237	Right-handed alpha
Helix 128	128	H	249	264	Right-handed alpha
Helix 129	129	H	273	278	Right-handed alpha
Helix 130	130	H	279	315	Right-handed alpha

There are 8 sheets in PDB entry 3JRK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	22	first strand
Strand 2	A	62	65	parallel
Strand 3	A	82	86	parallel
Strand 4	A	119	126	parallel
Strand 5	A	156	162	parallel
Strand 6	A	199	202	parallel
Strand 7	A	241	244	parallel
Strand 8	A	269	272	parallel
Strand 9	A	17	22	parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	22	first strand
Strand 2	B	62	65	parallel
Strand 3	B	82	86	parallel
Strand 4	B	119	126	parallel
Strand 5	B	156	162	parallel
Strand 6	B	199	202	parallel
Strand 7	B	241	244	parallel
Strand 8	B	269	272	parallel
Strand 9	B	17	22	parallel

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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	22	first strand
Strand 2	C	62	65	parallel
Strand 3	C	82	86	parallel
Strand 4	C	119	126	parallel
Strand 5	C	156	162	parallel
Strand 6	C	199	202	parallel
Strand 7	C	241	244	parallel
Strand 8	C	269	272	parallel
Strand 9	C	17	22	parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	22	first strand
Strand 2	D	62	65	parallel
Strand 3	D	82	86	parallel
Strand 4	D	119	126	parallel
Strand 5	D	156	162	parallel
Strand 6	D	199	202	parallel
Strand 7	D	241	244	parallel
Strand 8	D	269	272	parallel
Strand 9	D	17	22	parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	22	first strand
Strand 2	E	62	65	parallel
Strand 3	E	82	86	parallel
Strand 4	E	119	126	parallel
Strand 5	E	156	162	parallel
Strand 6	E	199	202	parallel
Strand 7	E	241	244	parallel
Strand 8	E	269	272	parallel
Strand 9	E	17	22	parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	22	first strand
Strand 2	F	62	65	parallel
Strand 3	F	82	86	parallel
Strand 4	F	119	126	parallel
Strand 5	F	156	162	parallel
Strand 6	F	199	202	parallel
Strand 7	F	241	244	parallel
Strand 8	F	269	271	parallel
Strand 9	F	17	22	parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	22	first strand
Strand 2	G	62	65	parallel
Strand 3	G	82	86	parallel
Strand 4	G	119	126	parallel
Strand 5	G	156	162	parallel
Strand 6	G	199	202	parallel
Strand 7	G	241	244	parallel
Strand 8	G	269	272	parallel
Strand 9	G	17	22	parallel

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	22	first strand
Strand 2	H	62	65	parallel
Strand 3	H	82	86	parallel
Strand 4	H	119	126	parallel
Strand 5	H	156	162	parallel
Strand 6	H	199	202	parallel
Strand 7	H	241	244	parallel
Strand 8	H	269	272	parallel
Strand 9	H	17	22	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3JRK

Analysis of interatomic Contacts of Structural Units in PDB entry:
3JRK