Analysis of interatomic Contacts of Structural Units in PDB entry:
3JRO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JRO entry

There are 2 chains in PDB entry 3JRO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 8LEU 1553
C
 ILE 33GLY 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3JRO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
109 113Right-handed 310
Helix 2
2
A
167 171Right-handed 310
Helix 3
3
A
1135 1142Right-handed alpha
Helix 4
4
A
1183 1186Right-handed 310
Helix 5
5
A
1187 1196Right-handed alpha
Helix 6
6
A
1217 1223Right-handed 310
Helix 7
7
A
1229 1242Right-handed alpha
Helix 8
8
A
1255 1283Right-handed alpha
Helix 9
9
A
1292 1299Right-handed alpha
Helix 10
10
A
1303 1314Right-handed alpha
Helix 11
11
A
1317 1323Right-handed alpha
Helix 12
12
A
1324 1326Right-handed 310
Helix 13
13
A
1330 1346Right-handed alpha
Helix 14
14
A
1352 1361Right-handed alpha
Helix 15
15
A
1373 1378Right-handed 310
Helix 16
16
A
1381 1392Right-handed alpha
Helix 17
17
A
1399 1409Right-handed alpha
Helix 18
18
A
1417 1428Right-handed alpha
Helix 19
19
A
1431 1441Right-handed alpha
Helix 20
20
A
1447 1458Right-handed alpha
Helix 21
21
A
1467 1485Right-handed alpha
Helix 22
22
A
1487 1497Right-handed alpha
Helix 23
23
A
1500 1515Right-handed alpha
Helix 24
24
A
1534 1553Right-handed alpha
Helix 25
25
C
35 49Right-handed alpha
Helix 26
26
C
50 55Right-handed alpha
Helix 27
27
C
59 65Right-handed alpha
Helix 28
28
C
65 82Right-handed alpha
Helix 29
29
C
104 108Right-handed 310
Helix 30
30
C
113 128Right-handed alpha
Helix 31
31
C
144 151Right-handed alpha
Helix 32
32
C
152 157Right-handed alpha
Helix 33
33
C
159 166Right-handed 310
Helix 34
34
C
170 190Right-handed alpha
Helix 35
35
C
192 201Right-handed alpha
Helix 36
36
C
205 212Right-handed alpha
Helix 37
37
C
212 218Right-handed alpha
Helix 38
38
C
224 228Right-handed 310
Helix 39
39
C
239 252Right-handed alpha
Helix 40
40
C
257 269Right-handed alpha
Helix 41
41
C
273 277Right-handed 310
Helix 42
42
C
282 304Right-handed alpha
Helix 43
43
C
309 313Right-handed 310
Helix 44
44
C
323 331Right-handed alpha
Helix 45
45
C
332 334Right-handed 310
Helix 46
46
C
341 353Right-handed alpha
Helix 47
47
C
354 369Right-handed alpha
Helix 48
48
C
382 386Right-handed 310
Helix 49
49
C
389 393Right-handed 310
Helix 50
50
C
394 399Right-handed alpha
Helix 51
51
C
399 404Right-handed alpha
Helix 52
52
C
408 422Right-handed alpha
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There are 8 sheets in PDB entry 3JRO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
24 28anti-parallel
Strand 3
A
33 39anti-parallel
Strand 4
A
42 49anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
69 74anti-parallel
Strand 3
A
79 85anti-parallel
Strand 4
A
88 95anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
115 120anti-parallel
Strand 3
A
124 129anti-parallel
Strand 4
A
139 142anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 153first strand
Strand 2
A
173 177anti-parallel
Strand 3
A
182 188anti-parallel
Strand 4
A
193 200anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 212first strand
Strand 2
A
220 226anti-parallel
Strand 3
A
231 236anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
269 272anti-parallel
Strand 3
A
278 279anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1162 1163first strand
Strand 2
A
1171 1172anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1198 1202first strand
Strand 2
A
1209 1214anti-parallel
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