Analysis of interatomic Contacts of Structural Units in PDB entry:
3JRS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JRS entry

There are 3 chains in PDB entry 3JRS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 31ASN 209
B
 SER 30ASN 209
C
 THR 38ASN 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3JRS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 48Right-handed alpha
Helix 2
2
A
68 77Right-handed alpha
Helix 3
3
A
81 85Right-handed 310
Helix 4
4
A
182 208Right-handed alpha
Helix 5
5
B
33 48Right-handed alpha
Helix 6
6
B
68 77Right-handed alpha
Helix 7
7
B
81 85Right-handed 310
Helix 8
8
B
182 209Right-handed alpha
Helix 9
9
C
40 48Right-handed alpha
Helix 10
10
C
68 77Right-handed alpha
Helix 11
11
C
81 85Right-handed 310
Helix 12
12
C
182 209Right-handed alpha
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There are 3 sheets in PDB entry 3JRS. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 65first strand
Strand 2
A
166 176anti-parallel
Strand 3
A
148 156anti-parallel
Strand 4
A
132 139anti-parallel
Strand 5
A
118 127anti-parallel
Strand 6
A
105 110anti-parallel
Strand 7
A
89 93anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 65first strand
Strand 2
B
166 176anti-parallel
Strand 3
B
148 156anti-parallel
Strand 4
B
132 139anti-parallel
Strand 5
B
118 127anti-parallel
Strand 6
B
105 110anti-parallel
Strand 7
B
89 93anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 65first strand
Strand 2
C
166 176anti-parallel
Strand 3
C
148 156anti-parallel
Strand 4
C
132 137anti-parallel
Strand 5
C
118 127anti-parallel
Strand 6
C
105 110anti-parallel
Strand 7
C
89 93anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il