Analysis of interatomic Contacts of Structural Units in PDB entry:
3JRU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JRU entry

There are 2 chains in PDB entry 3JRU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1ALA 490
A
 MET 1ALA 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3JRU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
31 41Right-handed alpha
Helix 2
2
B
43 51Right-handed alpha
Helix 3
3
B
82 86Right-handed 310
Helix 4
4
B
87 103Right-handed alpha
Helix 5
5
B
114 117Right-handed 310
Helix 6
6
B
123 140Right-handed alpha
Helix 7
7
B
165 188Right-handed alpha
Helix 8
8
B
194 207Right-handed alpha
Helix 9
9
B
218 225Right-handed alpha
Helix 10
10
B
227 235Right-handed alpha
Helix 11
11
B
278 285Right-handed 310
Helix 12
12
B
286 302Right-handed alpha
Helix 13
13
B
346 359Right-handed alpha
Helix 14
14
B
360 362Right-handed 310
Helix 15
15
B
373 381Right-handed alpha
Helix 16
16
B
391 405Right-handed alpha
Helix 17
17
B
415 423Right-handed 310
Helix 18
18
B
437 448Right-handed alpha
Helix 19
19
B
477 490Right-handed alpha
Helix 20
20
A
31 41Right-handed alpha
Helix 21
21
A
43 51Right-handed alpha
Helix 22
22
A
82 86Right-handed 310
Helix 23
23
A
87 103Right-handed alpha
Helix 24
24
A
114 117Right-handed 310
Helix 25
25
A
123 140Right-handed alpha
Helix 26
26
A
165 188Right-handed alpha
Helix 27
27
A
194 208Right-handed alpha
Helix 28
28
A
218 226Right-handed alpha
Helix 29
29
A
227 235Right-handed alpha
Helix 30
30
A
278 285Right-handed 310
Helix 31
31
A
286 302Right-handed alpha
Helix 32
32
A
346 359Right-handed alpha
Helix 33
33
A
360 362Right-handed 310
Helix 34
34
A
373 381Right-handed alpha
Helix 35
35
A
391 405Right-handed alpha
Helix 36
36
A
415 423Right-handed 310
Helix 37
37
A
437 448Right-handed alpha
Helix 38
38
A
477 490Right-handed alpha
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There are 8 sheets in PDB entry 3JRU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
158 162parallel
Strand 3
B
109 112parallel
Strand 4
B
19 24parallel
Strand 5
B
74 79parallel
Strand 6
B
61 65anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 217first strand
Strand 2
B
242 249anti-parallel
Strand 3
B
307 317anti-parallel
Strand 4
B
263 267parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 217first strand
Strand 2
B
242 249anti-parallel
Strand 3
B
307 317anti-parallel
Strand 4
B
257 261parallel
Strand 5
B
365 370parallel
Strand 6
B
455 459parallel
Strand 7
B
385 389anti-parallel
Strand 8
B
409 411parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 331first strand
Strand 2
B
337 339anti-parallel
Strand 3
B
429 430parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
158 162parallel
Strand 3
A
109 112parallel
Strand 4
A
19 24parallel
Strand 5
A
74 79parallel
Strand 6
A
61 65anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 217first strand
Strand 2
A
242 249anti-parallel
Strand 3
A
307 317anti-parallel
Strand 4
A
263 267parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 217first strand
Strand 2
A
242 249anti-parallel
Strand 3
A
307 317anti-parallel
Strand 4
A
257 261parallel
Strand 5
A
365 370parallel
Strand 6
A
455 459parallel
Strand 7
A
385 389anti-parallel
Strand 8
A
409 411parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
337 339anti-parallel
Strand 3
A
429 430parallel
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