Analysis of interatomic Contacts of Structural Units in PDB entry:
3JRW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JRW entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 3JRW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 220MET 221
A
 GLY 223LEU 759
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 3JRW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
246 254Right-handed alpha
Helix 2
2
A
268 288Right-handed alpha
Helix 3
3
A
300 307Right-handed alpha
Helix 4
4
A
308 314Right-handed alpha
Helix 5
5
A
324 328Right-handed 310
Helix 6
6
A
331 342Right-handed alpha
Helix 7
7
A
352 357Right-handed 310
Helix 8
8
A
358 366Right-handed alpha
Helix 9
9
A
375 383Right-handed alpha
Helix 10
10
A
384 395Right-handed alpha
Helix 11
11
A
425 431Right-handed alpha
Helix 12
12
A
436 448Right-handed alpha
Helix 13
13
A
472 484Right-handed alpha
Helix 14
14
A
540 558Right-handed alpha
Helix 15
15
A
589 597Right-handed alpha
Helix 16
16
A
599 608Right-handed alpha
Helix 17
17
A
612 615Right-handed 310
Helix 18
18
A
616 623Right-handed alpha
Helix 19
19
A
709 726Right-handed alpha
Helix 20
20
A
727 731Right-handed 310
Helix 21
21
A
734 743Right-handed alpha
Helix 22
22
A
743 748Right-handed alpha
Helix 23
23
A
753 757Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 3JRW. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 319first strand
Strand 2
A
294 299parallel
Strand 3
A
262 265parallel
Strand 4
A
346 348parallel
Strand 5
A
370 371parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 467first strand
Strand 2
A
451 455anti-parallel
Strand 3
A
489 493anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 582first strand
Strand 2
A
562 570anti-parallel
Strand 3
A
499 507anti-parallel
Strand 4
A
513 524anti-parallel
Strand 5
A
529 534anti-parallel
Strand 6
A
647 654anti-parallel
Strand 7
A
700 707anti-parallel
Strand 8
A
680 685anti-parallel
Strand 9
A
669 672anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il